PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11462_BGI-A2_v1.0

Common Name

F383_06394

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 186aa MW: 21075.1 Da PI: 8.5909

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11462_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	203.8	6.7e-63	6	159	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv 86 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ + +++++ + Cotton_A_11462_BGI-A2_v1.0 6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQD-------------IQAPNHAMQDYR 75 5689****************************************999998888776.............455566666777 PP YABBY 87 ekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 +ke+ +s++ +++ + ++ v++ v+rPP krqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfg Cotton_A_11462_BGI-A2_v1.0 76 MKESGSSSKCNKFPMRPPANNVVTEERVVNRPPGKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFG 158 77777777777777777888888888889***************************************************9 PP YABBY 170 l 170 l Cotton_A_11462_BGI-A2_v1.0 159 L 159 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.7E-70	8	159	IPR006780	YABBY protein
SuperFamily	SSF47095	3.01E-8	103	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	107	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSNCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDIQAPNHA MQDYRMKESG SSSKCNKFPM RPPANNVVTE ERVVNRPPGK RQRVPSAYNQ 120 FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LEANNQTKLH DASEKHIMSR 180 TALFNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090216	1e-65	BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016734016.1	1e-139	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_017605352.1	1e-139	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	2e-86	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0B0NJJ9	1e-137	A0A0B0NJJ9_GOSAR; Axial regulator YABBY 5-like protein
TrEMBL	A0A1U8N4J9	1e-137	A0A1U8N4J9_GOSHI; axial regulator YABBY 5-like
STRING	Gorai.009G016700.1	1e-137	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-81	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]