PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11632_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 83aa MW: 9679.97 Da PI: 5.8623

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11632_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	42.4	1.4e-13	36	75	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+Cn ++s+Clk+YCeCfaag +C++ C Ce+C Nk + Cotton_A_11632_BGI-A2_v1.0 36 ACKHCNRRRSRCLKLYCECFAAGIYCEDCCACENCLNKPD 75 689**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.7E-11	35	76	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	13.649	36	83	IPR005172	CRC domain
Pfam	PF03638	1.0E-9	38	73	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MEDSQKVSWL TNYPNPKIAQ KGRGKNRETF PDETEACKHC NRRRSRCLKL YCECFAAGIY 60 CEDCCACENC LNKPDYEEVV LDF

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480682.1	1e-39	PREDICTED: uncharacterized protein LOC105795543 isoform X1
Refseq	XP_012480684.1	8e-40	PREDICTED: uncharacterized protein LOC105795543 isoform X3
Refseq	XP_012480686.1	7e-40	PREDICTED: uncharacterized protein LOC105795543 isoform X5
Swissprot	F4JIF5	5e-15	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
Swissprot	Q9LUI3	6e-15	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A2P5S5T1	4e-42	A0A2P5S5T1_GOSBA; Uncharacterized protein
STRING	XP_006465501.1	5e-18	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35574	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-17	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]