PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11674_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 149aa    MW: 16424.9 Da    PI: 7.507
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11674_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.1e-18511311598
                                 -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                          B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                  +++p +fa+e ++ +e     +++d++gr+We+++ ++ ks  + l++GW++Fv++n+L++gD++ F+++ +++   +vk++
  Cotton_A_11674_BGI-A2_v1.0  51 SVSVPASFAKETSLAEEP--STVIKDSEGRKWELNILVDAKS-NVRLGAGWSQFVQENKLEAGDTISFQHIPNTGNVIYVKII 130
                                 4799********888654..47779***********877777.579*************************988888999988 PP

                                 - CS
                          B3  98 r 98 
                                 +
  Cotton_A_11674_BGI-A2_v1.0 131 S 131
                                 7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575127No hitNo description
PROSITE profilePS5086314.04337133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-1839130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-1639131No hitNo description
SuperFamilySSF1019361.63E-1640130IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-940133IPR003340B3 DNA binding domain
PfamPF023621.7E-1551132IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSSLLTRMEL ETVVALLSHF ISIIIACLGV SELILEQASL VVVLKKYHQY SVSVPASFAK  60
ETSLAEEPST VIKDSEGRKW ELNILVDAKS NVRLGAGWSQ FVQENKLEAG DTISFQHIPN  120
TGNVIYVKII SNARAANYGD GRNMRKNVC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647473.15e-77PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0B0PZA27e-79A0A0B0PZA2_GOSAR; Uncharacterized protein
STRINGGorai.003G020400.18e-45(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.12e-10DNA binding;DNA binding;sequence-specific DNA binding transcription factors