PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11719_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 282aa    MW: 31593.2 Da    PI: 10.1969
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11719_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind337.24.2e-10312821301
                   GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaer 70 
                                 mddd+ + rn+gyyep+  +k +lglqlmss+ erdak     r+ nl +++++ ++++rd         m++  rd+++a+ 
  Cotton_A_11719_BGI-A2_v1.0   1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMVERDAKSfipgRDPNL-MITTNTTFHQRDpivseahipMNY-VRDSWIAD- 78 
                                 9***9999*******99..*******************99********.************************.9*******. PP

                   GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkk 152
                                        ++k++++ ++++       +++ vl++t+ ++sl       l++++   +r+e+   a   +e+++ +ke  ++kk
  Cotton_A_11719_BGI-A2_v1.0  79 -------REKFFNMFPATT-------PNYAVLPETSAAHSLPI-----LQPPPDSsTRDERV--ASS-VEEPPANKEGVEPKK 139
                                 .......789*****9665.......57899********9988.....77777773444433..333.356888888899999 PP

                   GAGA_bind 153 rqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
                                 rq ++ pk +kakk+kk    +k++ +++   +r+k  kksi + +ng ++D+s++P+PvCsCtG+ +qCY+WG GGWqSaCC
  Cotton_A_11719_BGI-A2_v1.0 140 RQGGAAPKMPKAKKPKK----PKENANSAV--QRVKPAKKSIVFKINGYDMDISGIPIPVCSCTGTAQQCYRWGFGGWQSACC 216
                                 ****************9....333444444..689************************************************ PP

                   GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                 tt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLa e y++snp+DL++hWA+HGtnkfvtir
  Cotton_A_11719_BGI-A2_v1.0 217 TTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAVENYNFSNPIDLRSHWARHGTNKFVTIR 282
                                 *****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.7E-1091282IPR010409GAGA-binding transcriptional activator
SMARTSM012269.6E-1621282IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM VERDAKSFIP GRDPNLMITT NTTFHQRDPI  60
VSEAHIPMNY VRDSWIADRE KFFNMFPATT PNYAVLPETS AAHSLPILQP PPDSSTRDER  120
VASSVEEPPA NKEGVEPKKR QGGAAPKMPK AKKPKKPKEN ANSAVQRVKP AKKSIVFKIN  180
GYDMDISGIP IPVCSCTGTA QQCYRWGFGG WQSACCTTNV SMYPLPMSTK RRGARIAGRK  240
MSQGAFKKVL EKLAVENYNF SNPIDLRSHW ARHGTNKFVT IR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642872.10.0PREDICTED: protein BASIC PENTACYSTEINE1-like
RefseqXP_017642873.10.0PREDICTED: protein BASIC PENTACYSTEINE1-like
SwissprotQ9SKD01e-110BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A2P5XDJ80.0A0A2P5XDJ8_GOSBA; Uncharacterized protein
STRINGGorai.012G183100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-103basic pentacysteine 2