PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11745_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28752.7 Da    PI: 8.8347
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11745_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.4e-311059251
                                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                rienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Cotton_A_11745_BGI-A2_v1.0 10 RIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59
                                9***********************************************96 PP
2K-box109.73.3e-3675173199
                       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                 y++++ +++e++ + +++ e+++Lk++++ Lq+++Rh++GedL+sLslkeLq+LeqqL++++k+iRskKn+l+ e+i+elq+k
  Cotton_A_11745_BGI-A2_v1.0  75 YAERQLVATESQPQGNWSMEYNRLKAKVDLLQKNHRHYMGEDLDSLSLKELQNLEQQLDTAIKHIRSKKNHLISESISELQRK 157
                                 566778888899999******************************************************************** PP

                       K-box  84 ekelqeenkaLrkkle 99 
                                 ek++qe+n +L k+++
  Cotton_A_11745_BGI-A2_v1.0 158 EKAIQEQNAMLAKQIK 173
                                 *************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.029161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-34290IPR002100Transcription factor, MADS-box
CDDcd002652.82E-42279No hitNo description
PRINTSPR004041.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-3084172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.15788178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVQLQR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL VATESQPQGN WSMEYNRLKA KVDLLQKNHR HYMGEDLDSL  120
SLKELQNLEQ QLDTAIKHIR SKKNHLISES ISELQRKEKA IQEQNAMLAK QIKDREKTVA  180
QAQQSQWGQQ QQQLGLNTPT SFLLPQPPHP CLNIGGTYQE EATDQVRRNE LDLTLEPIYT  240
CHLGYFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-22174173MEF2 CHIMERA
6byy_B4e-22174173MEF2 CHIMERA
6byy_C4e-22174173MEF2 CHIMERA
6byy_D4e-22174173MEF2 CHIMERA
6bz1_A4e-22174173MEF2 CHIMERA
6bz1_B4e-22174173MEF2 CHIMERA
6bz1_C4e-22174173MEF2 CHIMERA
6bz1_D4e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556370.0KC155637.1 Gossypium hirsutum MADS box protein MADS42 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641030.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-134AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A1U8M7Z60.0A0A1U8M7Z6_GOSHI; truncated transcription factor CAULIFLOWER A-like isoform X1
STRINGEOY016281e-148(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-125MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]