PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11746_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MIKC_MADS

Protein Properties

Length: 211aa MW: 24207.5 Da PI: 7.4496

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11746_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.4	1.4e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye+ss Cotton_A_11746_BGI-A2_v1.0 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFSS 59 79***********************************************96 PP
2	K-box	65.7	1.6e-22	82	142	9	69
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 ++e ++++ +q++ kLk+++e Lq++qRh+lGe+L++L keL+qLe+qL+ slkkiRs K Cotton_A_11746_BGI-A2_v1.0 82 QTEIETQRNYQDYLKLKAKVEVLQHSQRHFLGEELGDLGSKELEQLEHQLDFSLKKIRSLK 142 567889****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.824	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-41	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.97E-43	2	78	No hit	No description
SuperFamily	SSF55455	5.23E-33	2	87	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-33	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	4.4E-17	86	142	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	9.608	87	177	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFSSS 60 NSIADTLERY NRCTYGALEP GQTEIETQRN YQDYLKLKAK VEVLQHSQRH FLGEELGDLG 120 SKELEQLEHQ LDFSLKKIRS LKLDENASTL RSTWETGEQS VPCNLQRPRF FEPLQCTTSM 180 QISYNVPADL THENIATTTS APSGFIPDWM L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-19	1	61	1	61	MEF2 CHIMERA
6byy_B	2e-19	1	61	1	61	MEF2 CHIMERA
6byy_C	2e-19	1	61	1	61	MEF2 CHIMERA
6byy_D	2e-19	1	61	1	61	MEF2 CHIMERA
6bz1_A	2e-19	1	61	1	61	MEF2 CHIMERA
6bz1_B	2e-19	1	61	1	61	MEF2 CHIMERA
6bz1_C	2e-19	1	61	1	61	MEF2 CHIMERA
6bz1_D	2e-19	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269\|PubMed:28528644}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM236436	0.0	HM236436.1 Gossypium hirsutum MADS20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641033.1	1e-152	PREDICTED: MADS-box protein CMB1-like
Swissprot	K4BND8	1e-82	MADS4_SOLLC; MADS-box protein 04g005320
TrEMBL	A0A2P5WXI5	1e-152	A0A2P5WXI5_GOSBA; Uncharacterized protein
STRING	Gorai.012G185600.1	1e-145	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24521	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.2	3e-75	MIKC_MADS family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]