PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11784_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 171aa MW: 19210.8 Da PI: 8.7617

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11784_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.7	1.8e-10	8	42	25	55
AP2 25 ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 +g +++r++lg+f taeeAa+a+++a+ + g Cotton_A_11784_BGI-A2_v1.0 8 RGvrqrQKRRVWLGTFETAEEAARAYDEAAILMSG 42 34433334*********************987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	14.117	1	50	IPR001471	AP2/ERF domain
CDD	cd00018	8.69E-23	5	51	No hit	No description
SuperFamily	SSF54171	3.27E-13	6	51	IPR016177	DNA-binding domain
SMART	SM00380	2.9E-21	6	56	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-7	8	40	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-18	13	50	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MVKSKKFRGV RQRQKRRVWL GTFETAEEAA RAYDEAAILM SGRSAKTNFP VPKNQTGDEN 60 TTTCNSLSSI LSEKLRKCCK TPSPSLTCLR LDTENAHIGV WQKRAGSRSD SCWVMTVELG 120 KKNGEVTETN KMPASDEPIT NKMVRQEVSD NGLDEEEKAA LQMIEELLNR N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	15	RQRQKR

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15070782, ECO:0000269\|PubMed:15319479}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648661.1	1e-120	PREDICTED: ethylene-responsive transcription factor WIN1 isoform X1
Swissprot	Q9XI33	2e-64	WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBL	A0A1U8IK04	1e-119	A0A1U8IK04_GOSHI; ethylene-responsive transcription factor WIN1-like
TrEMBL	A0A2P5XME8	1e-119	A0A2P5XME8_GOSBA; Uncharacterized protein
STRING	Gorai.011G082900.1	1e-114	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM834	28	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15360.1	2e-54	ERF family protein

Publications ? help Back to Top
Taketa S, et al. Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7 [PMID:18316719] Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato. Int J Mol Sci, 2014. 15(11): p. 19499-515 [PMID:25350113] Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486] Sajeevan RS, et al. Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss. Front Plant Sci, 2017. 8: p. 418 [PMID:28421085]