PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11954_BGI-A2_v1.0
Common NameF383_07799
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 199aa    MW: 21495.4 Da    PI: 4.915
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11954_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.9e-42341331100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+lrr+Ca++C+lapyfp ++++kf  +h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +l
  Cotton_A_11954_BGI-A2_v1.0  34 PCAACKILRRRCADKCMLAPYFPPTEQAKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQL 116
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 q+q+++l+a+la++++e
  Cotton_A_11954_BGI-A2_v1.0 117 QKQVNELQAQLAKAQAE 133
                                 *************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.11533134IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4234131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEYGEATPSA VASPNSSNPS SPSTPTSPLV VISPCAACKI LRRRCADKCM LAPYFPPTEQ  60
AKFTTAHRVF GASNIIKFLQ ELPESQRADA VSSMVYEASA RIRDPVYGCA GAICQLQKQV  120
NELQAQLAKA QAEVVNMQLQ QANLVGALLC MEATAPPPQP HPQQFAVDTF ICSPQSYHSN  180
PGFIDDDDNN NLGSLWEPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-41201361113LOB family transfactor Ramosa2.1
5ly0_B4e-41201361113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625407.11e-146PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK083e-73LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A0B0PTD91e-143A0A0B0PTD9_GOSAR; LOB domain-containing 11-like protein
STRINGGorai.004G012800.11e-106(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-62LOB domain-containing protein 11