PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12050_BGI-A2_v1.0
Common NameF383_06460
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 628aa    MW: 70153.3 Da    PI: 10.3636
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12050_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07534583147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                 r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Cotton_A_12050_BGI-A2_v1.0 534 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 583
                                 678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.11E-5349420IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.453529588IPR017930Myb domain
SuperFamilySSF466897.18E-15531617IPR009057Homeodomain-like
SMARTSM007171.2E-7533586IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10534584IPR009057Homeodomain-like
CDDcd116609.83E-17535585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MVSQTRLEYG FIGYQVPVFP RASRSARVRV PIRKKSGNNE KHAFEILVSV AGDFLQEGET  60
FVPPNCKKDQ QNACKNRVLK EQEDEIQSSK CNLSDKETYN EKTLSGYHQI RTVNKFSHAP  120
DQFNLKPYSS LKGFDKLANV SGRNANHSSE LGISSLISGE FSVGQFEDAG AELSIIQTVK  180
SETLQPTGSL DALEMDCKPP HYFCSGSKTS LFKDWTTLGP SRRSDTIETV SRDDNGNYMA  240
DQRIKNLSSS RRWRVSPNLN GGASFRNDGK RRKIFHDGRT SYSRQRSKRI SPLKTRDFFN  300
QCRFYGSDRG FQLDDRFNSA ADKRVDDDNY CAAIRVASSV ASPHPHPGSR DCNVKLRIKS  360
FKVPELLVEI PTTATVGSLK RSVMEAVTTV LGDGLHVGIL LQGKKVRDDS KTLIQTGISR  420
DGKHRNLGFM LEPRHAQIKL PRCLGEQGIT SHATSFTLDP RTSSISLDPP VVGCINGAQR  480
DHHLVPSLPN ISASTTLPNS QSGVSVPAIS GEALAVVPIH HRAGRREFVQ RRIRRPFSVS  540
EVEALVQAVE KLGTGRWRDV KLRAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP  600
QELLDRVLAV HAYRSQQQAK QQQLKSGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-535186211104Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288RQRSKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608707.10.0PREDICTED: telomere repeat-binding protein 2-like isoform X1
RefseqXP_017608708.10.0PREDICTED: telomere repeat-binding protein 2-like isoform X1
TrEMBLA0A0B0P8G20.0A0A0B0P8G2_GOSAR; Telomere repeat-binding 5-like protein
STRINGGorai.006G172000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2218045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-103TRF-like 2