PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12052_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 822aa    MW: 91537.9 Da    PI: 9.1313
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12052_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.51.4e-28108164258
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                 dDgy+WrKYGqK +k++++prsYY+C  ++C++kk+vers+++p++++itYeg H h
  Cotton_A_12052_BGI-A2_v1.0 108 DDGYKWRKYGQKWIKNTPNPRSYYKCRNPRCSAKKQVERSKDEPDTLIITYEGFHLH 164
                                 8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26105164IPR003657WRKY domain
SuperFamilySSF1182902.48E-24105164IPR003657WRKY domain
PROSITE profilePS5081125.511106167IPR003657WRKY domain
SMARTSM007742.8E-32107166IPR003657WRKY domain
PfamPF031061.2E-23108164IPR003657WRKY domain
Gene3DG3DSA:3.40.50.3009.6E-47455609IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525407.49E-46458654IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM003825.2E-11494657IPR003593AAA+ ATPase domain
CDDcd000091.16E-15495629No hitNo description
PfamPF000042.3E-29500622IPR003959ATPase, AAA-type, core
Gene3DG3DSA:1.10.8.607.1E-9610667No hitNo description
SuperFamilySSF1409901.44E-37664815No hitNo description
PfamPF014344.9E-34683814IPR000642Peptidase M41
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MEKEQKDDRF GCEDELVREL LDDESPLFVL QQGPKSKTSG EDSTKRLICA GPRIEDIQNA  60
LSVKTWNGTQ YQVQQQNRIN SIQQERGLTK IENKYTLKIK NYGNCMADDG YKWRKYGQKW  120
IKNTPNPRSY YKCRNPRCSA KKQVERSKDE PDTLIITYEG FHLHFAYPYL PLDNHHQPSP  180
DDTISPAKKA KQGISEAESQ VPETIANYTN IEPLPSSIEG CPPEMSLEAG FSQQGLLEDV  240
VPWVIRNPSH NNNISSISSS SSSSNYSRSP PASPYSLSTS PFYDPYLDIL SINSSIRGYF  300
ALAEAGKKLV LNARLSILDS ILGNPRIRRL FSSGGPKKRT YENYHPKNKK RIPKANEQKS  360
GGSIGSVESF EEKLEEVQEA LGIDPHNYVP VTYVSEVNRF QELLRFGPTL LLLGTFWFMG  420
RRMQSGFEVG DPGGRGGRGI FNIGKAQIKK MDKNAKDKVL FNDVAGCDEA KQEIMEFVHF  480
LKNPKKYEEL GAKIPKGAFF VGLSGTGKTL LAKATAGESG VPFLSMSGSD FMKMFVGVGP  540
SRVRSLFQEA RQCAPSIIFI DEIDAIGRAR GRGGFSGGNG ERESTLNQLL VEMRGFGTTS  600
GVVGFDGTNR PNILDRALLR PDIANVFNEA ALIAARNGSA VITMEHFEAA VDRVIGGLEK  660
KNKVISKLES QTVAYHESGH AVAGFAQYVP NENLLMTKEQ LSDVTCMTLG GRDAKQVLLR  720
KISTGAQSDL KKVTKMTYTQ VAVYGFSDKV GLLSFPQRDA FEMTKPYSSK TGAIIDSEVR  780
KWVVKAYERT MQLIEEHKEH VTQVAELLLE KTSFTRRTWF GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6nyy_A1e-13443481114465AFG3-like protein 2
6nyy_B1e-13443481114465AFG3-like protein 2
6nyy_C1e-13443481114465AFG3-like protein 2
6nyy_D1e-13443481114465AFG3-like protein 2
6nyy_E1e-13443481114465AFG3-like protein 2
6nyy_F1e-13443481114465AFG3-like protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable ATP-dependent zinc metallopeptidase. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698380.0KF669838.1 Gossypium hirsutum WRKY transcription factor 38 (WRKY38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483104.10.0PREDICTED: LOW QUALITY PROTEIN: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial
SwissprotQ0DHL40.0FTSH8_ORYSJ; ATP-dependent zinc metalloprotease FTSH 8, mitochondrial
TrEMBLA0A068LDA60.0A0A068LDA6_GOSHI; WRKY transcription factor 38
STRINGGorai.006G171800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3558422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-41WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Yu F,Park S,Rodermel SR
    Functional redundancy of AtFtsH metalloproteases in thylakoid membrane complexes.
    Plant Physiol., 2005. 138(4): p. 1957-66
    [PMID:16040665]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]