PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12240_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 244aa    MW: 27989.3 Da    PI: 5.4131
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12240_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171057148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +++WT+eEd ll+++++++G gtW++++ + g++R++k+c++rw++yl
  Cotton_A_12240_BGI-A2_v1.0 10 KDAWTEEEDILLKKCIEKYGEGTWHRVPFRAGLNRCRKSCRLRWLNYL 57
                                689*******************************************97 PP
2Myb_DNA-binding445.2e-1463108148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++  +E +l +++++ lG++ W++Ia +++ gRt++++k++w++yl
  Cotton_A_12240_BGI-A2_v1.0  63 RGAFADDEVDLMIRLHNVLGNR-WSLIAGRLP-GRTANDVKNYWNTYL 108
                                 788999****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.49561IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-20759IPR009057Homeodomain-like
SuperFamilySSF466894.12E-277104IPR009057Homeodomain-like
SMARTSM007174.6E-13959IPR001005SANT/Myb domain
PfamPF002491.7E-151057IPR001005SANT/Myb domain
CDDcd001672.08E-101257No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2360113IPR009057Homeodomain-like
SMARTSM007172.1E-1262110IPR001005SANT/Myb domain
PROSITE profilePS5129418.7362112IPR017930Myb domain
PfamPF002491.8E-1263108IPR001005SANT/Myb domain
CDDcd001679.36E-968108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEAPSLSVRK DAWTEEEDIL LKKCIEKYGE GTWHRVPFRA GLNRCRKSCR LRWLNYLKPD  60
IKRGAFADDE VDLMIRLHNV LGNRWSLIAG RLPGRTANDV KNYWNTYLRK KMVKPSPKLN  120
IEVIKPRPLN LSVPLDKNNN NNNNDSDHAA VSTPASNSLV SSDSGNNSSY DFSNDNNEIM  180
WWKNMLMNED EPQGFGNNIN HSASGDQFIN EALGDVRTQV VEEDNYGTVD ELFIDFDLWN  240
MLNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-21101127108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4918774e-91KC491877.1 Gossypium arboreum transcription factor AN2 mRNA, complete cds.
GenBankKF7494314e-91KF749431.1 Gossypium hirsutum cultivar Xincaimian 5 myb-related transcription factor A1 (MYBA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647923.11e-180PREDICTED: transcription factor MYB90-like
SwissprotQ9FNV96e-60MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1U8K0Z01e-86A0A1U8K0Z0_GOSHI; PAP1D-T
STRINGGorai.001G087200.14e-87(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-60myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]