PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12242_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 249aa    MW: 29132.8 Da    PI: 7.2048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12242_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-181057148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd+ll+++++++G g W+ ++++ g++R++k+c++rw++yl
  Cotton_A_12242_BGI-A2_v1.0 10 KGAWTEEEDLLLKKCIEKYGEGKWHQVPARAGLNRCRKSCRLRWLNYL 57
                                79********************************************97 PP
2Myb_DNA-binding45.61.7e-1463108148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg + ++E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Cotton_A_12242_BGI-A2_v1.0  63 RGHFAADEVDLIIRLHNLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108
                                 6778899***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.367561IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-23759IPR009057Homeodomain-like
SuperFamilySSF466895.5E-297104IPR009057Homeodomain-like
SMARTSM007174.2E-16959IPR001005SANT/Myb domain
PfamPF002494.6E-171057IPR001005SANT/Myb domain
CDDcd001679.55E-121257No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2260111IPR009057Homeodomain-like
PROSITE profilePS5129417.61662112IPR017930Myb domain
SMARTSM007172.9E-1362110IPR001005SANT/Myb domain
PfamPF002492.8E-1363108IPR001005SANT/Myb domain
CDDcd001671.55E-968108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEGSSLRVRK GAWTEEEDLL LKKCIEKYGE GKWHQVPARA GLNRCRKSCR LRWLNYLKPN  60
IKRGHFAADE VDLIIRLHNL LGNRWSLIAG RLPGRTANDV KNYWNTHLLK KNIDTFNKTS  120
NPKSHKLKPD TKVIKPRPQI LSKRSFLVNL DEYNNNNNNN NNDRAKTSNN VVLADCSDNH  180
DGYCFLDHDE MMWWENMMMN EKEVDGHQLQ CSANDIDQSV LDQIMNEDNY GNTMDELFLD  240
EELWNVFNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-22101157110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7494300.0KF749430.1 Gossypium hirsutum cultivar Xincaimian 6 myb-related transcription factor A1 (MYBA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646322.10.0PREDICTED: transcription factor MYB90-like
SwissprotQ9FNV91e-64MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3T0D1000.0A0A3T0D100_GOSAR; PAP2A
STRINGGorai.001G087400.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-65myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]