PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12289_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 503aa    MW: 54107.3 Da    PI: 6.5081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12289_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.39.7e-31234292259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                  Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Cotton_A_12289_BGI-A2_v1.0 234 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 292
                                 7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-34218294IPR003657WRKY domain
SuperFamilySSF1182906.8E-28226294IPR003657WRKY domain
PROSITE profilePS5081129.838228294IPR003657WRKY domain
SMARTSM007741.0E-36233293IPR003657WRKY domain
PfamPF031069.1E-27235292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDVTTPPTIQ FPVNFNCCHD QDPSFLPSDD DVVVDNDDDK QKTGLNLLTT NTSSDISNDG  60
IHCNTEDKRA KDEVAVLQAE VERMNTENQR LREMLSQVTS NYNTVQMHLV TLMQQPPDAK  120
AEEQDQIKQI KKSNGGLMVP SPRQFMDLRL PAVDIDEPSL SSSDHSGSDL ASKGFGLRKR  180
DSSEDSPDQG SQGQGWVANK VPRFNSSKNV DQTEATMRKA RVSVRARSEA TMITDGCQWR  240
KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTI LITTYEGNHN HPLPPAAMAM  300
ASTTSSAARM LLSGSMSSAD GLMNSNVLTR TILPCSSSMA TISASAPFPT VTLDLTQTPN  360
PFQSPRLTPG RFQVPFPNPP QNLANSPAAA LLPQIFGQAL HTQSKFSGLQ MSGDVGHQQL  420
QISLAETVNA ATAAIAADPN FTAALAAAIT SIIGSSQPNN AAIPNDNAAT ANLTSVTNSR  480
ANNATTTSNS NNKITNNSSF TAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-23220296176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628539.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-128WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A2P5YWE00.0A0A2P5YWE0_GOSBA; Uncharacterized protein
STRINGGorai.007G171900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-94WRKY family protein