PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12455_BGI-A2_v1.0
Common NameF383_05220
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 756aa    MW: 82077.3 Da    PI: 6.2837
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12455_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.66.7e-1293867442374
                        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                  +lLl+cAeavs++++e a+++L +ls+l++p g++ qR+aayf eA++arl++s+ +++  lp+ + s  ++++ ++a+++f
  Cotton_A_12455_BGI-A2_v1.0 386 LTLLLQCAEAVSANNFEDANRMLLELSQLSTPFGTSAQRVAAYFSEAISARLVSSCLGICGGLPSIPPS--HTQKMVSAFQVF 466
                                 579************************************************************999887..5899999***** PP

                        GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                 + +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g     s e+le+tg+rL++
  Cotton_A_12455_BGI-A2_v1.0 467 NGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SLEALEATGKRLSD 545
                                 *****************************************************************....9************* PP

                        GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                 fA++lg+pfef + va+++ +le+e+L+v++ Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h +
  Cotton_A_12455_BGI-A2_v1.0 546 FADKLGIPFEFCP-VADKVGNLEPERLNVSKTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-G 620
                                 *************.7*************************9..999999999999....**********************.7 PP

                        GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                                 +sFl rf+ea++yysalfdsl a++++eseer++vE++ll++ei+nv+a  g +r  ++ ++++Wre+l+++GFkp++l  +a
  Cotton_A_12455_BGI-A2_v1.0 621 GSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLALGGPSRSSEEVKFHNWREKLQQSGFKPISLAGNA 703
                                 89********************************************************************************* PP

                        GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 a+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  Cotton_A_12455_BGI-A2_v1.0 704 ATQATLLLGMFPSDGYTLVEDNGALKLGWKDLCLLTASAWR 744
                                 ****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.121359724IPR005202Transcription factor GRAS
PfamPF035142.3E-126386744IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MAACDLVGEN GGINGRNSND ESQMRSTMRK RMASEVADYH RFPRRTQFVS DNNMACSFIA  60
ATGASNNPNP LFNYSTMNMD NVNTIVPSAN FAALTSAGPA FLSTTASNFS CVDAVGTNSP  120
QPPAVCGFSG LPLFPPTERN RNTAVASAAV TATSVNTTVP VSLAPISNSV DDSSATAWID  180
GVIRDLIHTS SNVSIPQLIH NVREIIYPCN PNLAALLEYR LRSLMDPLER RRKEAPPPPL  240
HLPEVSLARH HSQQQQQQGS SGLTLNLDST IDSLPNYSLT EPCAMNQYLS WGITPLPISS  300
NNQVSSSPSA TTPPVPSLNQ HHRAQGQPLV QENTSPVEKT TASTATVGTT TTAPTSTVET  360
VQACNGRDRK EELRQQKRDE EGLHLLTLLL QCAEAVSANN FEDANRMLLE LSQLSTPFGT  420
SAQRVAAYFS EAISARLVSS CLGICGGLPS IPPSHTQKMV SAFQVFNGIS PFVKFSHFTA  480
NQAIQEAFER EERVHIIDLD IMQGLQWPGL FHILASRPGG PPHVRLTGLG TSLEALEATG  540
KRLSDFADKL GIPFEFCPVA DKVGNLEPER LNVSKTEAVA VHWLQHSLYD VTGSDTNTLW  600
LLQRLAPKVV TVVEQDLSHG GSFLGRFVEA IHYYSALFDS LGASYGEESE ERHVVEQQLL  660
SKEIRNVLAL GGPSRSSEEV KFHNWREKLQ QSGFKPISLA GNAATQATLL LGMFPSDGYT  720
LVEDNGALKL GWKDLCLLTA SAWRPFHATT TTTLHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03697453380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611270.10.0PREDICTED: protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A0B0N7K50.0A0A0B0N7K5_GOSAR; Protein SCARECROW-like protein
STRINGGorai.006G236200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81642640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein