PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12520_BGI-A2_v1.0
Common NameF383_26594
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 226aa    MW: 25677.2 Da    PI: 8.369
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12520_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.7e-171360148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W+++Ed++l+d+++ +G g+W++ ++  g++R++k+c++rw +yl
  Cotton_A_12520_BGI-A2_v1.0 13 KGAWSKQEDQKLIDYIRIHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60
                                79********************************************97 PP
2Myb_DNA-binding51.42.6e-1666110147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Cotton_A_12520_BGI-A2_v1.0  66 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                                 8999******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-24463IPR009057Homeodomain-like
PROSITE profilePS5129417.807860IPR017930Myb domain
SuperFamilySSF466891.21E-2810107IPR009057Homeodomain-like
SMARTSM007172.8E-141262IPR001005SANT/Myb domain
PfamPF002493.4E-151360IPR001005SANT/Myb domain
CDDcd001673.21E-111560No hitNo description
PROSITE profilePS5129426.33161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-2664115IPR009057Homeodomain-like
SMARTSM007173.7E-1565113IPR001005SANT/Myb domain
PfamPF002491.2E-1466110IPR001005SANT/Myb domain
CDDcd001671.06E-1068111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRKPCCDKQG TNKGAWSKQE DQKLIDYIRI HGEGCWRSLP KAAGLHRCGK SCRLRWINYL  60
RPDIKRGNFA QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IKRKLMKMGI  120
DPNNHKLNQY PHHVGPLNPT TTNSMDVARK LRVCSTDNDD GVSDAASYLE DATPPTGISN  180
LDLDLTIAFP SSPIKNIIEE SQQKIASIVT NDEEEEYTVP TLLLFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29131157108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0341340.0AF034134.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629510.11e-170PREDICTED: transcription repressor MYB6-like
SwissprotQ388519e-76MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A0B0PFE51e-168A0A0B0PFE5_GOSAR; Transcription repressor MYB6-like protein
STRINGGorai.007G179300.11e-163(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.14e-78myb domain protein 6