PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_12683_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 349aa MW: 38929.1 Da PI: 6.3123

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_12683_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.2e-52	21	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp +k + +ewyfFs rd+ky+tg r+nrat +gyW Cotton_A_12683_BGI-A2_v1.0 21 LPPGFRFHPTDEELITFYLASKVFNGSFCG-VDIAEVDLNRCEPWELPDVAKMGAREWYFFSLRDRKYPTGVRTNRATGAGYW 102 79***********************877.34***********88888999*********************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd+ev+s+ +g+l g+kktLvfykgrap+g+kt Wvmheyrl Cotton_A_12683_BGI-A2_v1.0 103 KATGKDREVYSAsTGALLGMKKTLVFYKGRAPRGVKTMWVMHEYRL 148 ******9878889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-62	16	170	IPR003441	NAC domain
PROSITE profile	PS51005	58.342	21	170	IPR003441	NAC domain
Pfam	PF02365	3.8E-27	22	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MLAVEEVLSE LGGEEVNEQG LPPGFRFHPT DEELITFYLA SKVFNGSFCG VDIAEVDLNR 60 CEPWELPDVA KMGAREWYFF SLRDRKYPTG VRTNRATGAG YWKATGKDRE VYSASTGALL 120 GMKKTLVFYK GRAPRGVKTM WVMHEYRLDG DFSCRHTCKE EWVICRIIHK TGEKKNGVAA 180 AQGLGYILEL SSLSSTTKTT NCFRPLLETS TPLLESQTQT SMQAAHNSFL EHDLKSLINP 240 VVYPANGFQP SFTATPTTFS STPDKNASSN SSAAASMLFK SLLSHQECVL REQAAATIPK 300 QCKTEANFSN FQLPDSTLSW MEKMHPNPCQ DPMFFDVDYN NSVLGFAEL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MLAVEEVLSE LGGEEVNEQG LPPGFRFHPT DEELITFYLA SKVFNGSFCG VDIAEVDLNR  60
CEPWELPDVA KMGAREWYFF SLRDRKYPTG VRTNRATGAG YWKATGKDRE VYSASTGALL  120
GMKKTLVFYK GRAPRGVKTM WVMHEYRLDG DFSCRHTCKE EWVICRIIHK TGEKKNGVAA  180
AQGLGYILEL SSLSSTTKTT NCFRPLLETS TPLLESQTQT SMQAAHNSFL EHDLKSLINP  240
VVYPANGFQP SFTATPTTFS STPDKNASSN SSAAASMLFK SLLSHQECVL REQAAATIPK  300
QCKTEANFSN FQLPDSTLSW MEKMHPNPCQ DPMFFDVDYN NSVLGFAEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-53	18	173	12	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847244	0.0	KC847244.1 Gossypium hirsutum NAC domain protein NAC67 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641088.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851	1e-109	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A2P5XQD1	0.0	A0A2P5XQD1_GOSBA; Uncharacterized protein
STRING	Gorai.002G113300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	4e-99	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]