PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12693_BGI-A2_v1.0
Common NameF383_24542
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 1066aa    MW: 117636 Da    PI: 8.2899
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12693_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.13.9e-41151228178
                                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                 +Cqv++C++dls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Cotton_A_12693_BGI-A2_v1.0 151 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKATKALVEKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 228
                                 6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.2E-34146213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.035149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-37150230IPR004333Transcription factor, SBP-box
PfamPF031104.9E-30152225IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.203.1E-4814951IPR020683Ankyrin repeat-containing domain
CDDcd002047.83E-7814956No hitNo description
SuperFamilySSF484033.32E-6856980IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1066 aa     Download sequence    Send to blast
MEDAGAQVAP PLYIHQALAS RFCDPPSLPR KRDLSYQASD FLYQNPSQQR VANPRDNWNP  60
KQWEWDAVRF IAKPLNTEIL QTGTATAEQR KTGHVNGNEN SITSKKATAA NDDDERLQLN  120
LGGGLNSVED PVSRPNKKVC GGSPGSTSFP MCQVDNCKED LSNAKDYHRR HKVCEIHSKA  180
TKALVEKQMQ RFCQQCSRFH PLSEFDEGKR SCRRRLAGHN RRRRKTQPED VTSRLLLPAN  240
RDNAGNGSKT EDKSINPSPV PNRDQLLQIL SKINSLPLPM DLAAKLPNVG VLNRKSQEQP  300
SLGNQNQLNG KNTSSPSTVD LLAALSATLT SSSSDALAML SQRSSQSSDS QKTKSICPDN  360
VAASSSLNRA PLEFTSVGGE RSSTSYQSPV EDSECQIQET RANLPLQLFS SSPEDDSPPK  420
LASSRKYFSS DSSNPMEERS PSSSPVVQKF FPMHSTPEAV KYEKVPIGRH ANTNAETSRA  480
HGSIIPLELF SGSKRGTGRG SFQHFPSQVG YTSSSGSDHS PSSLNSDAQD RTGRIIFKLF  540
DKDPSHFPGT LRTQIYNWLS NSPSEMESYI RPGCVVLSVY VSMPAPAWEQ LEGNLLQYVN  600
CLLQDSDSDF WRKARFLVHT GNRQLASHKD GKIHLCKSWL SSSSPELISV SPLAVVSGQE  660
TSLLLRGRNL TNPGTEIHCA YMGGYSSMQI NGSTYKGASY DEANMGSFKI QVPSPKALGR  720
CFIEAENGFK GNSFPIIIAD AAICKELRLL ESELDTEVKA SDIISEEHAY DSHRPRSREE  780
VLHFLNELGW LFQRSTAPLP KSSDHSLRRF KFLLMFSVES DYCALVKVLL DMLVESNLDM  840
DDLSKDLLAM LSEIQLLTRA VKRRCRKMAD LLIHYSISSN DGNSKKYIFP PNLEGAGGIS  900
PLHLAACTSG SDDMVDVLTN DPQEIGLTCW SSLLDANGQS PYAYAMMRNN HSYNKLVAGK  960
YADRRNGQVS LTIGVEDQHS GVSAVQLNKI SLRFKQDRSS CAKCAVVATR SNNRFPGSQG  1020
LLQRPYVHSM LAIAAVCVCV CLFLRGSPNI GRVSPFKWEN LDFGTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-32142225184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1858863RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223220.0KJ622322.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641665.10.0PREDICTED: squamosa promoter-binding-like protein 14
RefseqXP_017641666.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A0B0P4N40.0A0A0B0P4N4_GOSAR; Squamosa promoter-binding-like protein 14
STRINGGorai.002G112200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]