PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12918_BGI-A2_v1.0
Common NameF383_25897
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 306aa    MW: 34170.3 Da    PI: 9.61
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12918_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-072469346
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                +WT  E + + +a + + ++   +W ++a++++ g+t  +++  ++ 
  Cotton_A_12918_BGI-A2_v1.0 24 KWTSAENKMFENALAVYDKDtpdRWQKVAEMIP-GKTVGDVIKQYRE 69
                                8********************************.******9999986 PP
2Myb_DNA-binding48.22.5e-15131175347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Cotton_A_12918_BGI-A2_v1.0 131 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 175
                                 8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-41969IPR009057Homeodomain-like
PROSITE profilePS512938.5512075IPR017884SANT domain
SMARTSM007175.6E-92173IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-112378IPR009057Homeodomain-like
PfamPF002494.9E-62469IPR001005SANT/Myb domain
CDDcd001675.43E-72470No hitNo description
PROSITE profilePS5129421.817124180IPR017930Myb domain
SuperFamilySSF466897.03E-17126179IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-18127179IPR006447Myb domain, plants
SMARTSM007172.7E-13128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-13128175IPR009057Homeodomain-like
CDDcd001671.35E-11131176No hitNo description
PfamPF002495.4E-13131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEILSPASYL SSRNWFGEES KSTKWTSAEN KMFENALAVY DKDTPDRWQK VAEMIPGKTV  60
GDVIKQYREL EADVSSIEAG LVPIPGYSTS PFTLDWVNSN GYDGLKQSYG IGGKRSSSGR  120
PADHERKKGV PWTEEEHKLF LMGLKKYGKG DWRNISRNFV VTRTPTQVAS HAQKYFIRQL  180
SGGKDKRRAS IHDITTVNLN DMRTPSPDNK GTPSPEQSSV LTQQPNSAAM PRTHFQWNPP  240
CGGATMAFNS AQGSMLMSSP YGVPSYGLKM QGQSLQRSAA HESYFGPQNL VFQMQSAEQY  300
PQNHLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1625901176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646575.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-148DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0B0MSI10.0A0A0B0MSI1_GOSAR; Transcription factor MYB1R1
STRINGGorai.009G093700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-110MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]