PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12929_BGI-A2_v1.0
Common NameF383_08153
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 387aa    MW: 42664.8 Da    PI: 8.4919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12929_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-05149172123
                                 EEETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                 ++C+ Cg+ F  +++L++H+ t H
  Cotton_A_12929_BGI-A2_v1.0 149 FPCTACGEIFQKPHLLEQHQATkH 172
                                 89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.598149177IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
SuperFamilySSF563991.25E-11175386No hitNo description
Gene3DG3DSA:3.90.228.109.4E-6321386IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAKTNIGSFF NKFLSLFILL LHLGCFVFTA AKDNHKATKK RKSSPLSPNS HKHRKALSST  60
WTFLKRIFSS KANCINTIQA AHPPTSATTP ALTSARNSQH SLVSMSMINP PETHLSDSPP  120
PLSQIQSGSC PESDISSDYP FFPLRNDIFP CTACGEIFQK PHLLEQHQAT KHAVSELVDG  180
DSGNNIGRII LKTGWTDKVK SPEIHRILKI HNSPKILTKF EEYREVVKAK AARNGAMGRR  240
DERCIADGNE LLRFNCSTFT CDLGLNGSSS ICNQQYCSIC GIIKSGFSPK MDGISTLSTS  300
WRAHMAIPED VEEEFKFMNV KRAMLVCRVV AGRVGSEGEE IDKEDGGFDS VIGRGGGSGA  360
YTKFDEEELL VFNPRAVLPC FVIVYTV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649776.10.0PREDICTED: uncharacterized protein LOC108489622
RefseqXP_017649777.10.0PREDICTED: uncharacterized protein LOC108489622
TrEMBLA0A2P5X0450.0A0A2P5X045_GOSBA; Uncharacterized protein
STRINGGorai.009G092800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-113C2H2 family protein