PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_12997_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 420aa MW: 47325.1 Da PI: 8.0534

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_12997_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.5e-06	2	25	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +k++lC+ffa G C G+ C F+H Cotton_A_12997_BGI-A2_v1.0 2 PKRVLCKFFAH-GACLKGEHCEFSH 25 79***6666.*********** PP
2	zf-CCCH	17.1	1e-05	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ Cotton_A_12997_BGI-A2_v1.0 34 ICTFYQK-GNCFYGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	17.5	7.1e-06	142	164	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa G C++G++C+ +Hg Cotton_A_12997_BGI-A2_v1.0 142 RSICS-FAVAGNCPRGEKCPHIHG 164 67899.**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.9E-5	1	27	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.136	1	28	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.68E-7	4	26	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.22	30	56	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0011	30	55	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.46E-5	32	53	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.7E-4	34	53	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.502	139	166	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.02	141	165	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF57850	2.66E-13	196	272	No hit	No description
Gene3D	G3DSA:3.30.40.10	5.7E-10	201	267	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd00162	0.0014	207	267	No hit	No description
PROSITE profile	PS50089	12.238	208	266	IPR001841	Zinc finger, RING-type
SMART	SM00184	2.8E-7	208	265	IPR001841	Zinc finger, RING-type
Pfam	PF00097	4.7E-7	208	265	IPR018957	Zinc finger, C3HC4 RING-type
PROSITE pattern	PS00518	0	232	241	IPR017907	Zinc finger, RING-type, conserved site
PROSITE profile	PS50103	10.408	295	320	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	295	323	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MPKRVLCKFF AHGACLKGEH CEFSHQWKHP PNNICTFYQK GNCFYGSRCR YEHVKASQSD 60 PSASSSSTAP QQSTLSDTMP LTPSKTAFVG SVVPPAASNK VPGSSRACLA PFKQPCDLES 120 GPQDPSDNGE SMEPRSTNPV ERSICSFAVA GNCPRGEKCP HIHGDLCPTC EKHCLHPFRP 180 EEREEHIKMC KKKKKYLDAL KHSQEIECSV CLDRVLSKPT AAERKFGLLS ECDHPFCISC 240 IRNWRSSSPS SGMDVNTALR ACPICRKLSY FVIPSVIWYW TPEEKQRILD GYKAKLRTIN 300 CKHFNFGNGN CPFGNSCFYK VNALQIHVMD MDAIFEVFGH LITEDEMNIL YAEDIDKDHA 360 YRDGQLEEVA LRHLRAEDGR TIITKNIRYS LPLFCTFASR TKALYSHLLV VFSFQSCLPS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MPKRVLCKFF AHGACLKGEH CEFSHQWKHP PNNICTFYQK GNCFYGSRCR YEHVKASQSD  60
PSASSSSTAP QQSTLSDTMP LTPSKTAFVG SVVPPAASNK VPGSSRACLA PFKQPCDLES  120
GPQDPSDNGE SMEPRSTNPV ERSICSFAVA GNCPRGEKCP HIHGDLCPTC EKHCLHPFRP  180
EEREEHIKMC KKKKKYLDAL KHSQEIECSV CLDRVLSKPT AAERKFGLLS ECDHPFCISC  240
IRNWRSSSPS SGMDVNTALR ACPICRKLSY FVIPSVIWYW TPEEKQRILD GYKAKLRTIN  300
CKHFNFGNGN CPFGNSCFYK VNALQIHVMD MDAIFEVFGH LITEDEMNIL YAEDIDKDHA  360
YRDGQLEEVA LRHLRAEDGR TIITKNIRYS LPLFCTFASR TKALYSHLLV VFSFQSCLPS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625198.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 69
Refseq	XP_017625304.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 69-like
Swissprot	E0X9N4	1e-154	C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBL	A0A0B0MSS0	0.0	A0A0B0MSS0_GOSAR; Uncharacterized protein
STRING	Gorai.004G173300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2944	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	1e-126	C3H family protein

Publications ? help Back to Top
Wang CT,Ho CH,Hseu MJ,Chen CM The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes. Plant Mol. Biol., 2010. 74(1-2): p. 155-66 [PMID:20652368]