PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13045_BGI-A2_v1.0

Common Name

F383_31332

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 184aa MW: 20655.8 Da PI: 9.6534

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13045_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.2e-15	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l d++ ++G g+W++ ++ g+ R++k+c++rw +yl Cotton_A_13045_BGI-A2_v1.0 13 KGAWSKLEDQKLTDYILKHGEGCWRSLPQAAGLLRCGKSCRLRWVNYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	53.1	7.2e-17	66	108	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+ Cotton_A_13045_BGI-A2_v1.0 66 RGKFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNHWN 108 89******************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.634	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	4.21E-27	11	107	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-11	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-13	13	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.2E-21	14	67	IPR009057	Homeodomain-like
CDD	cd00167	3.22E-8	15	60	No hit	No description
PROSITE profile	PS51294	27.064	61	115	IPR017930	Myb domain
SMART	SM00717	1.5E-15	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-15	66	108	IPR001005	SANT/Myb domain
CDD	cd00167	7.15E-11	68	111	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.8E-25	68	115	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MRKPCCEKKD TNKGAWSKLE DQKLTDYILK HGEGCWRSLP QAAGLLRCGK SCRLRWVNYL 60 RPDLKRGKFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNHWNIH LKKKLLMMGI 120 DPNNRRSLLS PTLTKSNASN DSSSACQPFN PATASEAISC TCLPDLNLNL TIAPPLSHQN 180 LALN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-26	10	115	4	108	B-MYB
1h8a_C	1e-26	10	115	24	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ459165	2e-70	AJ459165.1 Gossypium hirsutum partial myb135 gene, clone pGhMYB135.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609851.1	1e-133	PREDICTED: myb-related protein Zm38-like
Swissprot	P81393	3e-73	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A0B0MZV3	1e-132	A0A0B0MZV3_GOSAR; Myb-related protein
STRING	Gorai.006G192400.1	1e-119	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-73	myb domain protein 3

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]