PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13116_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 161aa    MW: 17684.8 Da    PI: 7.0252
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13116_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-051032123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y+C+ C + F++   L  H+++H
  Cotton_A_13116_BGI-A2_v1.0 10 YTCTFCRREFRSAQALGGHMNVH 32
                                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-6737No hitNo description
Gene3DG3DSA:3.30.160.606.7E-4835IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00661032IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1571037IPR007087Zinc finger, C2H2
PfamPF139121.0E-51033IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGTTWPPRSY TCTFCRREFR SAQALGGHMN VHRRDRARLH QTHPPAPTVP LINQTSSSTT  60
QDFVSDGGLC LLYQIPTTNG VFNSPSMNPC SLDSTPPLLS MSTYPSNNLM APPQPQPYIN  120
YPATPPGLHN SSSADNNISS METSIEELDL ELRLGQRPTP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-14532229superman protein
2l1o_A5e-14532229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6159541e-150JX615954.1 Gossypium hirsutum clone NBRI_GE60252 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625489.11e-114PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1U8KNL21e-111A0A1U8KNL2_GOSHI; transcriptional regulator SUPERMAN-like
STRINGGorai.004G185800.11e-103(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.19e-35C2H2 family protein