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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cotton_A_13123_BGI-A2_v1.0 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | LSD | ||||||||
| Protein Properties | Length: 68aa MW: 6817.92 Da PI: 7.8313 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 48.2 | 1.8e-15 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL+YP+GA+sV+Ca+C+++
Cotton_A_13123_BGI-A2_v1.0 28 CSGCRNLLMYPAGATSVCCAVCNAI 52
***********************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| TIGRFAMs | TIGR01053 | 7.2E-15 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 9.8E-13 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 68 aa Download sequence Send to blast |
MPVPLAPYPT PSGSYTPPAN GAQSQLVCSG CRNLLMYPAG ATSVCCAVCN AITAVPPPGT 60 SSAIHFIP |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016703831.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_016703833.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_016703834.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_016703835.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_016721326.1 | 5e-35 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_016721327.1 | 5e-35 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_017625404.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_017625405.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
| Refseq | XP_017625406.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
| Swissprot | Q93ZB1 | 2e-21 | LOL1_ARATH; Protein LOL1 | ||||
| TrEMBL | A0A0B0PTX4 | 1e-33 | A0A0B0PTX4_GOSAR; Protein LOL1-like protein | ||||
| TrEMBL | A0A1U8KS66 | 1e-33 | A0A1U8KS66_GOSHI; protein LOL1-like | ||||
| TrEMBL | A0A1U8M3F7 | 1e-33 | A0A1U8M3F7_GOSHI; protein LOL1-like | ||||
| TrEMBL | A0A2P5SU98 | 1e-33 | A0A2P5SU98_GOSBA; Uncharacterized protein | ||||
| STRING | Gorai.004G186300.1 | 8e-31 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM7293 | 26 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G32540.1 | 2e-21 | lsd one like 1 | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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