PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13201_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 163aa    MW: 18655.8 Da    PI: 9.8926
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13201_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.14.3e-2566109144
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                 d+ep+rCrRtDGKkWRCsr+v +++k+CErH h++r rsrk++e
  Cotton_A_13201_BGI-A2_v1.0  66 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 109
                                 79***************************************987 PP
2QLQ60.54.6e-211145236
                         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                                +FTaaQ+q+L++Q ++yKy++a++PvP+eLl +++
  Cotton_A_13201_BGI-A2_v1.0 11 PFTAAQWQELERQTMIYKYMMASVPVPAELLIPLT 45
                                9******************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-121046IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.7E-151144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.8661146IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.47966110IPR014977WRC domain
PfamPF088791.9E-2067109IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAAAPANARV PFTAAQWQEL ERQTMIYKYM MASVPVPAEL LIPLTKNPSN AIKGSLELGF  60
SSNSSDPEPW RCRRTDGKKW RCSRDVAPDQ KYCERHSHKS RPRSRKPVEL PNHSNININN  120
NDHKSQTLHN MASDGTTNQP HQNPHFTNHH DPHFFTSSFD QSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}.
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085415e-74DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732760.11e-118PREDICTED: growth-regulating factor 8-like isoform X3
SwissprotQ8L8A88e-39GRF2_ARATH; Growth-regulating factor 2
SwissprotQ9SU447e-39GRF8_ARATH; Growth-regulating factor 8
TrEMBLA0A0D2Q1X81e-117A0A0D2Q1X8_GOSRA; Uncharacterized protein
TrEMBLA0A1U8N1291e-117A0A1U8N129_GOSHI; growth-regulating factor 8-like isoform X3
STRINGGorai.008G259500.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-33growth-regulating factor 2
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]