PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13207_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 27906 Da PI: 6.1045

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13207_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.4e-19	40	94	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++++f++eq++ Le +Fe+++ p +++LA++lgL+ rq+ +WFqNrRa+ k Cotton_A_13207_BGI-A2_v1.0 40 RNKRRFSDEQIRSLEVMFESDSRPESLIKQQLANELGLQPRQIAIWFQNRRARSK 94 67889************************************************98 PP
2	HD-ZIP_I/II	110.3	1.4e-35	41	132	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +krr+s+eq+++LE +Fe++++ e+ K++la+eLglqprq+a+WFqnrRAR k+kq+E+dy++L+++ydal+++ e+L+ e+ Cotton_A_13207_BGI-A2_v1.0 41 NKRRFSDEQIRSLEVMFESDSRPESLIKQQLANELGLQPRQIAIWFQNRRARSKAKQIERDYNVLQESYDALSSSYESLKLEN 123 79******************************************************************************* PP HD-ZIP_I/II 85 eeLreelke 93 ++Lr +l++ Cotton_A_13207_BGI-A2_v1.0 124 QSLRIQLQK 132 **99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.17E-18	23	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-18	31	94	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.236	36	96	IPR001356	Homeobox domain
SMART	SM00389	5.3E-18	39	100	IPR001356	Homeobox domain
CDD	cd00086	1.37E-15	40	97	No hit	No description
Pfam	PF00046	6.4E-17	40	94	IPR001356	Homeobox domain
PRINTS	PR00031	3.9E-5	67	76	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	71	94	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.9E-5	76	92	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.1E-16	96	137	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MLANKEQLHT AAVKMELGLS GLDHLDMRHH AITNVKSSNR NKRRFSDEQI RSLEVMFESD 60 SRPESLIKQQ LANELGLQPR QIAIWFQNRR ARSKAKQIER DYNVLQESYD ALSSSYESLK 120 LENQSLRIQL QKLKGQLEME HENQQHHGPN RADENSGNAK PENGSTILDT NKKVTILLEG 180 YDRLLPCNDN SRNVESEDGD RVALDIIKAT NGSLTSSEKW CHFESNCFLD ESSCSSNWWE 240 YW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	96	RRARSKAKQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243110	0.0	AC243110.1 Gossypium raimondii clone GR__Ba0028M03-hoi, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439840.1	1e-170	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A2P5XZ33	1e-178	A0A2P5XZ33_GOSBA; Uncharacterized protein
STRING	Gorai.008G258900.1	1e-169	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18057	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-41	homeobox 7