PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13320_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 197aa    MW: 21484.3 Da    PI: 5.6634
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13320_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.52.4e-43351341100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +l
  Cotton_A_13320_BGI-A2_v1.0  35 PCAACKILRRRCADKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPESQRADAVSSIVYEASARIRDPVYGCAGAICQL 117
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 q+q+++l+a+la++++e
  Cotton_A_13320_BGI-A2_v1.0 118 QKQVNELQAQLAKAQAE 134
                                 *************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.17234135IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-4335132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEYTSEVAAQ SPSPKSSNSS SSPPPPPPTS VVISPCAACK ILRRRCADKC VLAPYFPPTE  60
PTKFTIAHRV FGASNIIKFL QELPESQRAD AVSSIVYEAS ARIRDPVYGC AGAICQLQKQ  120
VNELQAQLAK AQAEVVNMQL QQANLVALLC MEVAQSPQQN PHQPIDDFLS NSPQSYHSNP  180
SFLDDNNLGS SWEPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-42271373113LOB family transfactor Ramosa2.1
5ly0_B3e-42271373113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158951e-112JX615895.1 Gossypium hirsutum clone NBRI_GE60161 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645902.11e-143PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR09e-74LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK082e-73LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A1U8NXZ41e-122A0A1U8NXZ4_GOSHI; LOB domain-containing protein 1-like
STRINGGorai.001G129700.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.19e-65LOB domain-containing protein 11