PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13395_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 407aa    MW: 45654 Da    PI: 8.4446
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13395_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1821.5e-56651911129
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrFhPtdeel+++yL kkv + ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyW
  Cotton_A_13395_BGI-A2_v1.0  65 LPPGFRFHPTDEELISHYLYKKVLDVNFSA-KAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDSGYW 146
                                 79**************************99.88***************888999***************************** PP

                         NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                 katgkdke+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle
  Cotton_A_13395_BGI-A2_v1.0 147 KATGKDKEIYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 191
                                 ***********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6560215IPR003441NAC domain
PROSITE profilePS5100560.23365215IPR003441NAC domain
PfamPF023651.9E-2966190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MVGLGWRCGA VRLAYLLSHA TVSNLTTTAV FTLTADFGTQ ALGLKVVPGM ANIGAIGQEH  60
DQMDLPPGFR FHPTDEELIS HYLYKKVLDV NFSAKAIGEV DLNKSEPWEL PWKAKMGEKE  120
WYFFCVRDRK YPTGLRTNRA TDSGYWKATG KDKEIYRGKS LVGMKKTLVF YKGRAPKGEK  180
TNWVMHEYRL EGKYSVHNLP KTAKNEWVIC RVFQKSSGGK KTHISGLVNM GSFGNELGPS  240
GLPPLMDSSS SFNAKKNPVS ESVYVPCFSN PVDVQRIQLD TIDHFPENPL LLPVSSNPTN  300
IFPRFQASNP FFSAQPITFP PNLHLPGSVL MQDQSILRDL LENHGSNMKS ERETMVTVSQ  360
ETGLTTDINN EISSVVSNLE IRKRPFDDQQ HPSASTGPLD FDCFWHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-56582217171NO APICAL MERISTEM PROTEIN
1ut4_B5e-56582217171NO APICAL MERISTEM PROTEIN
1ut7_A5e-56582217171NO APICAL MERISTEM PROTEIN
1ut7_B5e-56582217171NO APICAL MERISTEM PROTEIN
3swm_A5e-565822110174NAC domain-containing protein 19
3swm_B5e-565822110174NAC domain-containing protein 19
3swm_C5e-565822110174NAC domain-containing protein 19
3swm_D5e-565822110174NAC domain-containing protein 19
3swp_A5e-565822110174NAC domain-containing protein 19
3swp_B5e-565822110174NAC domain-containing protein 19
3swp_C5e-565822110174NAC domain-containing protein 19
3swp_D5e-565822110174NAC domain-containing protein 19
4dul_A5e-56582217171NAC domain-containing protein 19
4dul_B5e-56582217171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141420.0JQ914142.1 Gossypium hirsutum NAC domain protein 11 (NAC11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634617.10.0PREDICTED: NAC domain-containing protein 100-like
RefseqXP_017634618.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-153NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0B0NFZ50.0A0A0B0NFZ5_GOSAR; NAC domain-containing protein
STRINGGorai.008G194400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-156NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]