PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13484_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 278aa MW: 31015.1 Da PI: 4.8532

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13484_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.3	6.2e-37	14	68	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvP+Ggg+rkn++ Cotton_A_13484_BGI-A2_v1.0 14 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKNRRG 68 8***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	1	67	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	13	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-31	13	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEREWKPSGE ISPNCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPIGG 60 GCRKNRRGKS LLRLPTDGAL CNKSLSSDSC DNKVNALSDS NTSSSMSDGS HIDLALLFAN 120 FLNNQQPENK SSFEVPELLT EFDPSREFPS LSNTNMESSL QLPKENGVTG CLTHSDFSTD 180 YHLSNNDQIY HSGLDYLDRV QQCTGDETSN YALPPLPDDD LSSQEILWPN SHSSITHALH 240 LQATQEPLLG PETQDPNLLF GNWSPFDLSS DDTFSTRT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610559.1	0.0	PREDICTED: dof zinc finger protein DOF3.5-like
TrEMBL	A0A2P5YA36	0.0	A0A2P5YA36_GOSBA; Uncharacterized protein
STRING	Gorai.006G148800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9141	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-38	Dof family protein