PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13575_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 706aa    MW: 79934.6 Da    PI: 5.8233
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13575_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822138.95.2e-4350128280
                      DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeae 80 
                                 g+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr++  p+++++
  Cotton_A_13575_BGI-A2_v1.0  50 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRHSPPPQHQQH 128
                                 899******************************************************************8777773333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.0E-4250132IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514459.18E-156264700IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.808.1E-169267698IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.4E-81291661IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-54304318IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-54325343IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-54347368IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-54440462IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-54513532IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-54547563IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-54564575IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-54582605IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.3E-54620642IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MESQPQPQPQ PQPQPRRPRG FAATAAAAAA SVSPTGAPSG SAGASTASSG KGKREREKEK  60
ERTKLRERHR RAITSRMLAG LRQYGNFPLP ARADMNDVLA ALAREAGWTV EPDGTTYRHS  120
PPPQHQQHLY ILCSSQYPDN FSGHPYCKCF TGCYFMSTVL DLSLWQPYFD IDNAQGAFSV  180
RSGESPLSAT SLKNCSVKAT LDCQQPVVRI DDSLSPASLD SVVIAERDTR SEKYPSTSPI  240
NSVECLEADQ LIQDVHSTEH DNDFTGSQYV PVYVKLSTGV INNFCQLADP DDVRQELSHM  300
NSLNVDGVIV DCWWGIVECW NPQKYVWSGY RELFNYIREF KMKIQVVMAF HEYGRTDSAD  360
VLISLPNWIL EIGKENQDIF FTDREGRRTT EFLSWGIDKE RVLNGRTGVE VYFDLMRSFR  420
TEFDDLFAEG LISAVEIGLG PSGELRYPSF SERMGWRYPG IGEFQCYDKY LQQHLRKAAK  480
LRGHSFWARG PDNAGHYNSR PHETGFFCER GDYDSYYGRF FLHWYAQALM DHADNVLSLA  540
NLAFEETKII VKIPAVYWWY KTSSHAAELT AGYNNPTNQD GYSPVFEVLK KHSVTVKFVC  600
YGLQVCSYEN DEAFADPEGL SWQVLNSAWD RGLKVAGENT LSCYDREGCL RIIETAKPRN  660
DPDRRHFSFF VYQQPSPLVQ GVICLPDLDY FIKCMHGDIT GDLVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12126865910401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637364.10.0PREDICTED: beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1U8N7300.0A0A1U8N730_GOSHI; Beta-amylase
STRINGGorai.008G218300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]