PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13624_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 293aa    MW: 33200.3 Da    PI: 6.8406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13624_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-06112131626
                                 -SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                                 C+ f+  G C+ Gd C FaHg
  Cotton_A_13624_BGI-A2_v1.0 112 CPAFRN-GKCQKGDACEFAHG 131
                                 555655.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-4106132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338106133IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5112131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5112134IPR000571Zinc finger, CCCH-type
SMARTSM0035628141164IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSKGVTNPSF YEFAEQQFIS SFNLAQAHAE AEAEAQAQAQ AQAQAQAQAL ARYNNALDEA  60
IYGSDEFRMY AYKIKRCTRM RSHDWTECPY AHRGEKAQRR DPRKFPYTAI ACPAFRNGKC  120
QKGDACEFAH GVFEYWLHPV KYRTRACNAG MFCQRKVCFF AHTPDQLRSD SKFSGPFAHK  180
GRMVMKRGGD HQLMMMMGSP SGGVEGSTSM QAQYVEPSPP PPPPPHQLEG VSTLLKSLRV  240
LKMREDEERE LNNKKNKNNS IKDEDEDEDG DGDGVEMADM DLPHLDWITE LVK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165950.0JX616595.1 Gossypium hirsutum clone NBRI_GE61372 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636284.10.0PREDICTED: zinc finger CCCH domain-containing protein 54
TrEMBLA0A0D2RJK91e-162A0A0D2RJK9_GOSRA; Uncharacterized protein
STRINGGorai.008G213800.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-71C3H family protein