PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13845_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-X1
Protein Properties Length: 902aa    MW: 100803 Da    PI: 8.4352
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13845_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1162.6e-05193211120
                    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                                 CG H C  lCH+GpCp+Cp+
  Cotton_A_13845_BGI-A2_v1.0 193 CG-HFCLLLCHPGPCPSCPK 211
                                 **.***************96 PP
2zf-NF-X116.61.7e-05245263119
                    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                 C kH C+++CH+G CppC+
  Cotton_A_13845_BGI-A2_v1.0 245 CNKHNCSEICHPGTCPPCR 263
                                 779***************8 PP
3zf-NF-X1186.3e-06405424120
                    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                                 CG+H C++ C+ G+CppC++
  Cotton_A_13845_BGI-A2_v1.0 405 CGRHACKRRCCDGDCPPCSE 424
                                 ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.65E-575152No hitNo description
PROSITE patternPS01359080146IPR019786Zinc finger, PHD-type, conserved site
CDDcd060088.62E-6181229No hitNo description
PfamPF014220.003193210IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0049193211IPR000967Zinc finger, NF-X1-type
CDDcd060085.16E-8235283No hitNo description
PfamPF014220.0063245263IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0022245264IPR000967Zinc finger, NF-X1-type
CDDcd060082.48E-8288328No hitNo description
PfamPF014220.22298316IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0016298317IPR000967Zinc finger, NF-X1-type
CDDcd060081.11E-8342391No hitNo description
PfamPF014220.0092352371IPR000967Zinc finger, NF-X1-type
SMARTSM004381.8352372IPR000967Zinc finger, NF-X1-type
CDDcd060082.43E-8395443No hitNo description
PfamPF014228.8E-4405423IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092405424IPR000967Zinc finger, NF-X1-type
CDDcd060083.33E-6422493No hitNo description
PfamPF01422160432443IPR000967Zinc finger, NF-X1-type
SMARTSM00438140432446IPR000967Zinc finger, NF-X1-type
SMARTSM0043824512533IPR000967Zinc finger, NF-X1-type
PfamPF014226.9522532IPR000967Zinc finger, NF-X1-type
PfamPF0142241541550IPR000967Zinc finger, NF-X1-type
PfamPF014220.13623634IPR000967Zinc finger, NF-X1-type
SMARTSM0043812623653IPR000967Zinc finger, NF-X1-type
PfamPF014220.25666683IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017666684IPR000967Zinc finger, NF-X1-type
SMARTSM0043812729750IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MNTTANYHPP PSSQPPFSDS DLDSGSDSEN FQVGSDLSNS IFKTYLEFSS SSSSSSSITA  60
VDLSKIQSFL TSSSSGALSC LICLERIRPS DPTWSCSSLC FALFHLLCIQ SWARQSSDLS  120
AARAAARLPI TAETAAKQAT WNCPKCRSSY SKSEIPRCYL CFCGKLRDPP SDNPWILPHS  180
CGEICNRPLP NNCGHFCLLL CHPGPCPSCP KSVKARCFCG SVEDFRRCGF KNFSCNKLCK  240
KRLDCNKHNC SEICHPGTCP PCRARETYRC RCGKKEEEKD CCDRDYRCEN ECKKLLNCGK  300
HVCERGCHGG DCGECPLQGN RTCPCGKRIY EGLPCDGVAP VCGATCNKLL NCGFHRCPER  360
CHKGSCVETC RTMVKKACRC GGLKKEVPCY QDLSCERKCL RMRDCGRHAC KRRCCDGDCP  420
PCSEVCDKRL RCKNHKCPAP CHRCYTFFAL STYPAGKLTM SFHYCRGACA PCPIMVTISC  480
ACGETHFEVP CGTEMDHKPP KCRKLCKIAP LCRHASTSKP HRCHYGACPP CRAPCEEEYP  540
CGHKCNLRCH GPRPPPNPEF TLKPKKKKSN HQTECTPGTP CPPCPELVWR PCVGEHFGAE  600
RMMVCSNTTR FSCDNLCGNL LPCGNHYCTK TCHPLETQPS SSGHQKRSES CEVCNLPCQK  660
VRMPKCSHPC SLPCHPGECL PCKVLVKRSC HCGAMVHAFE CIHYNNLSEK DQVAARSCGG  720
PCHRKLPNCT HLCPEICHVD KCPAPDKCSK KVTVRCKCQT LKKEWICQDV QAAYRDTGND  780
PKDIPKNQFG LGLLPCNSDC KSKVQEVESA LQLRKPKVLE KKEPENEKHG PKRRKRRDRI  840
QEGKQVSRFQ EFVASVKRLL LFIIIGAVLI AVTYYSYKGL LQLSDWMNEV ELQRARRRRS  900
RF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1830836PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6161041e-156JX616104.1 Gossypium hirsutum clone NBRI_GE60511 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643156.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0D2RAU30.0A0A0D2RAU3_GOSRA; Uncharacterized protein
STRINGGorai.010G197800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors