PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13877_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 153aa MW: 17587.8 Da PI: 6.5345

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13877_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	47.7	3.7e-15	8	103	5	95
NF-YB 5 drflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 ++lP a v r++k+ l + + + kda e + fi ++++ a+d c++ kr+t+n++d++ al ++ f ++v+p Cotton_A_13877_BGI-A2_v1.0 8 AEELPKAIVRRVVKEKLSEcspdyDFNVHKDAHLAFTESARIFIHYLSATANDICKESKRQTMNAEDVFKALEEIEFSEFVKP 90 5689********9997622222458**************************************************** PP NF-YB 83 lkvylkkyreleg 95 l++ l+++r+ ++ Cotton_A_13877_BGI-A2_v1.0 91 LRASLAEFRKKNA 103 *******8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.8E-33	5	151	IPR009072	Histone-fold
Pfam	PF00808	5.6E-10	10	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.33E-24	11	119	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MEKVVSEAEE LPKAIVRRVV KEKLSECSPD YDFNVHKDAH LAFTESARIF IHYLSATAND 60 ICKESKRQTM NAEDVFKALE EIEFSEFVKP LRASLAEFRK KNAGKKGGAA KENEVKKKRK 120 IEDSSAKNGT KTKQKKEDNH KEEQIEEEQE QDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	119	RKKNAGKKGGAAKENEVKKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017606901.1	1e-105	PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBL	A0A1U8PI57	2e-95	A0A1U8PI57_GOSHI; DNA polymerase epsilon subunit 3-like
STRING	Gorai.009G085200.1	9e-96	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-47	nuclear factor Y, subunit B11