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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cotton_A_13887_BGI-A2_v1.0 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | bZIP | ||||||||
| Protein Properties | Length: 1303aa MW: 146774 Da PI: 6.3443 | ||||||||
| Description | bZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | bZIP_1 | 31.4 | 4.1e-10 | 183 | 217 | 4 | 38 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38
k rr+++NReAAr+sR+RKka++++Le +L
Cotton_A_13887_BGI-A2_v1.0 183 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKL 217
6889************************9754444 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.20.5.170 | 1.1E-6 | 176 | 226 | No hit | No description |
| SMART | SM00338 | 7.1E-7 | 180 | 247 | IPR004827 | Basic-leucine zipper domain |
| PROSITE profile | PS50217 | 9.14 | 182 | 226 | IPR004827 | Basic-leucine zipper domain |
| Pfam | PF00170 | 3.5E-7 | 183 | 224 | IPR004827 | Basic-leucine zipper domain |
| CDD | cd14708 | 1.08E-23 | 184 | 236 | No hit | No description |
| SuperFamily | SSF57959 | 3.13E-6 | 184 | 227 | No hit | No description |
| PROSITE pattern | PS00036 | 0 | 187 | 202 | IPR004827 | Basic-leucine zipper domain |
| Pfam | PF14144 | 8.0E-29 | 265 | 340 | IPR025422 | Transcription factor TGA like domain |
| SMART | SM01335 | 3.7E-17 | 580 | 633 | IPR012982 | PADR1 domain |
| Pfam | PF08063 | 1.4E-17 | 583 | 632 | IPR012982 | PADR1 domain |
| PROSITE profile | PS50172 | 14.953 | 667 | 759 | IPR001357 | BRCT domain |
| Pfam | PF00533 | 4.6E-8 | 669 | 746 | IPR001357 | BRCT domain |
| Gene3D | G3DSA:3.40.50.10190 | 5.2E-15 | 669 | 757 | IPR001357 | BRCT domain |
| SMART | SM00292 | 2.4E-11 | 669 | 749 | IPR001357 | BRCT domain |
| SuperFamily | SSF52113 | 1.57E-15 | 671 | 758 | IPR001357 | BRCT domain |
| CDD | cd00027 | 7.43E-8 | 674 | 747 | No hit | No description |
| SuperFamily | SSF142921 | 5.62E-25 | 783 | 912 | IPR008893 | WGR domain |
| CDD | cd08001 | 5.17E-34 | 810 | 912 | No hit | No description |
| SMART | SM00773 | 4.2E-23 | 818 | 901 | IPR008893 | WGR domain |
| Pfam | PF05406 | 5.1E-12 | 818 | 897 | IPR008893 | WGR domain |
| Gene3D | G3DSA:1.20.142.10 | 5.2E-21 | 902 | 1076 | IPR004102 | Poly(ADP-ribose) polymerase, regulatory domain |
| CDD | cd01437 | 1.41E-113 | 940 | 1291 | No hit | No description |
| PROSITE profile | PS51060 | 19.678 | 940 | 1059 | IPR004102 | Poly(ADP-ribose) polymerase, regulatory domain |
| SuperFamily | SSF47587 | 7.72E-29 | 940 | 1076 | IPR004102 | Poly(ADP-ribose) polymerase, regulatory domain |
| Pfam | PF02877 | 1.4E-20 | 941 | 1074 | IPR004102 | Poly(ADP-ribose) polymerase, regulatory domain |
| PROSITE profile | PS51059 | 65.638 | 1068 | 1299 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
| SuperFamily | SSF56399 | 1.25E-46 | 1077 | 1295 | No hit | No description |
| Pfam | PF00644 | 2.5E-51 | 1078 | 1292 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
| Gene3D | G3DSA:3.90.228.10 | 1.4E-50 | 1079 | 1293 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0006471 | Biological Process | protein ADP-ribosylation | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1303 aa Download sequence Send to blast |
MENHRIGKTG LTNSGPSSNY HHHAVLHGMN APISSNFIHQ NGPAFGFGEL EEAIVPHGVE 60 LTNDEAKAPV FTRSRPSSAA LEMLPSNWSL RFQQTPRGSW NSRGESTDSV SSSAVNTLPS 120 NQLQPESPIS QKASSSADHH QLFNHKPLQQ QQLEMASDIS SLNQSAAQEK GRGSSSSEKQ 180 LDAKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIKLAQL EQDLQRTRSQ GFFVGGCAAA 240 FGNISSGAAM FDMEYSRWLE DDHRHLSELR TGLHAHLPDT DLQTIVDGYI SHYDKIFRLK 300 EAAAKSDVLH LITGMWMTPV ERCFVWIGDF RPSELIKMLV SQLDPLTEHQ VMGICNLQHS 360 SQQAEEALTL GLEQLYHSLI DSIAGGPVIH EMQQMAVALS KLANLEGFLH QADNLRQQIL 420 HQLPRILTVR QTARCFLVIG EYNQRLQALS SLWTSHGPPE LRMNQVRRLK PRCSILGLPA 480 LKFQLHEKRS HSHAHGTGDE EKIMTRKQKA DQLKSNEGNE SPKKPKVEAD NDQHNGKATT 540 EVAKEFEEFC KSVREHLSVA QMREILEANG QDSSGSDASV VIKCLDMLFY GPLEKCQICN 600 GDLEFDGNRY SCKGTYSEWS SCVYKTRSPA RKQEPFKLPD SVLNSPVAGL VKKYEDPKLR 660 PHRYVGVTDK PFLGMMISLM GRLSRTHQYW KTKIEKHGGT VSNSVIGVTC LVASPAERER 720 GGSSKLVEAM ERGVRVVSEA WLLDSIEKQE AQPLEAYDIV TDLAVDGKGI PWDKQVPEEH 780 AIESLSAELK LYGKRGVYKD TRLQEQGGQI FEEDGILYNC VFSLCDQGGA INEYCIMQLV 840 KVPDSNLHLY YKKGRVGDDP NAQERLEEWK DVVGAVKEFV RLFEEVTGNE FEPWEREKKF 900 QKKPLKFYPI DMFPCIDKDD GVDVRCGGLG LRQLGVAAAH CKLEPMVANF MKVLCSQEIY 960 KYALMEMDLD APDLPMGMLS NVHLERCEEV LQEFIEKVKS MKESGPKAEA VWSDFSQRWF 1020 TLMHSSRPFI FRDYQELADH AAASFECVRD IVVASHMIGH MGDDTLDDPL SDRYKKIGCS 1080 ISPLDKDSED YKMILNYVEK TYEPVKLADI EYGISVENIF NVETKEGPSF DEVKKLPNKR 1140 LLWCGTRSSN LLRHLHKGFL PASCSLPVPG YMFGKGIVCS DAAAEAARYG FTAVDRPEGF 1200 LVLAVFSQGE EIMELKNPPE DTKPLEEKKV CVKGLGRKKP DESEYIDWKD DIKVPCGRLI 1260 PSEHQDSPLE YNEYTVYDPK QVSMRFLVGV KFEEKDTVMD AQD |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4opx_C | 1e-56 | 788 | 1298 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| 4opx_F | 1e-56 | 788 | 1298 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| 4oqa_C | 1e-56 | 788 | 1298 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| 4oqa_F | 1e-56 | 788 | 1298 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| 4oqb_C | 1e-56 | 788 | 1298 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| 4oqb_F | 1e-56 | 788 | 1298 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity). {ECO:0000250|UniProtKB:Q9Y6F1}. | |||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | JX581673 | 3e-37 | JX581673.1 Gossypium hirsutum clone NBRI_GE14350 microsatellite sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017606713.1 | 0.0 | PREDICTED: poly [ADP-ribose] polymerase 3 | ||||
| Swissprot | Q9SWB4 | 0.0 | PARP3_SOYBN; Protein ADP-ribosyltransferase PARP3 | ||||
| TrEMBL | A0A0B0NJ65 | 0.0 | A0A0B0NJ65_GOSAR; Poly [ADP-ribose] polymerase | ||||
| STRING | Gorai.009G086300.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM12149 | 2 | 2 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G08320.3 | 1e-155 | bZIP family protein | ||||
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