PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14044_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 163aa MW: 18762 Da PI: 6.5191

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14044_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.7e-17	15	55	1	41
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 rg+WT+eEd++l+++v+ +G+++Wk++a++ g++R++k+c+ Cotton_A_14044_BGI-A2_v1.0 15 RGAWTAEEDQKLAQVVEIHGPKRWKAVAAKAGLNRCGKSCR 55 89**************************************8 PP
2	Myb_DNA-binding	28.1	4.7e-09	55	79	23	48
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++++k++w+++l Cotton_A_14044_BGI-A2_v1.0 55 RWSLIAGRLP-GRTDNEIKNYWNSHL 79 5*******.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-16	6	55	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.271	10	83	IPR017930	Myb domain
SMART	SM00717	3.1E-16	14	81	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.82E-17	15	79	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-15	15	55	IPR001005	SANT/Myb domain
CDD	cd00167	7.34E-11	17	79	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-12	56	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MAPTSTKCSK KEVNRGAWTA EEDQKLAQVV EIHGPKRWKA VAAKAGLNRC GKSCRWSLIA 60 GRLPGRTDNE IKNYWNSHLS KKIKQNEKQT RMQEPVLENS KVSEREEPLH KASEEGSSKR 120 DEEYSTSCFN GDSSLFDLYN EEPLELEWMS HFFETDEIWL NLA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582297	2e-64	JX582297.1 Gossypium hirsutum clone NBRI_GE15106 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016753002.1	1e-111	PREDICTED: transcription factor MYB114-like
Refseq	XP_017646585.1	1e-111	PREDICTED: transcription factor MYB114-like
TrEMBL	A0A1U8PPB7	1e-110	A0A1U8PPB7_GOSHI; transcription factor MYB114-like
TrEMBL	A0A2P5WPG5	1e-110	A0A2P5WPG5_GOSBA; Uncharacterized protein
STRING	Gorai.009G040800.1	1e-109	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28110.1	8e-27	myb domain protein 41