PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14067_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 539aa    MW: 58127.4 Da    PI: 4.7586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14067_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11315360555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h+++Er RR++i +++ +L+el+P++      K +Ka+iL + + Y+k Lq
  Cotton_A_14067_BGI-A2_v1.0 315 HSIAERLRREKIAERMKNLQELIPNS-----NKTDKASILDEIIGYVKFLQ 360
                                 99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.69E-12308364No hitNo description
SuperFamilySSF474599.03E-17308371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.787310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16312370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8315360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-13316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDDYLDQYFS SSSSSAVNVK ERSYWVHNEP DHPNEVFPSS RFNSIECLAA QNTPPVVHNR  60
GSGCSVEHGL LYGEGGLQMN GENCSGNSSQ EMMNGSFELR NLGLQLDTDV HSSGSLSLVS  120
SNDVPVVGDM VPSLSFNERG RMISNGGDSS EFLRSFTGLE TLSPIPQLWH LQPYDSVSSL  180
PTLVGQTKVD DEGNTNRFIE IDEILQPENL SASINAKVLI LIMTSLYGSF NWLYSIVCIG  240
AWFLNNLLLL MSMYQGQQDM QNSFYSSFPA DHPITKTMIG LPSLVQGASP NLNNGSDRTA  300
KPRVRARRGQ ATDPHSIAER LRREKIAERM KNLQELIPNS NKTDKASILD EIIGYVKFLQ  360
LQVQVLSMSR LGAAAAVVPL ITDGQAEGSN GLSLAPLAGQ GVDFSPSPDQ VVFEQEVVKL  420
MESNMTMAMQ YLQSKGFCLM PVALAAAISN VKSSTSSSSS VPASDESKKL GFTNGTLINT  480
TCSSSNSSSN SSGSLPGVGI PNINADGNFM TGMLGSDIMA KGCTGTFKQE ELKTLCTAK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153240.0JX615324.1 Gossypium hirsutum clone NBRI_GE59251 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605932.10.0PREDICTED: uncharacterized protein LOC108452639
TrEMBLA0A1U8PG460.0A0A1U8PG46_GOSHI; uncharacterized protein LOC107958820
STRINGGorai.009G038500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16266914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-55LJRHL1-like 3