PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14094_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 310aa    MW: 35731.7 Da    PI: 9.8319
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14094_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.31.3e-322106199
                                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                 f+kv tpsdv++++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+
  Cotton_A_14094_BGI-A2_v1.0   2 FDKVVTPSDVGRLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDI 84 
                                 89****************************66677899********************************************* PP

                                 EEEEE-.SS.SEE..EEEEE-S CS
                          B3  80 vvFkld.gr.sefelvvkvfrk 99 
                                 v F++  g+  + +l++ ++r+
  Cotton_A_14094_BGI-A2_v1.0  85 VSFQRGvGEsGKDRLYIDWRRR 106
                                 ****665777888999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-401114IPR015300DNA-binding pseudobarrel domain
CDDcd100175.84E-27196No hitNo description
SuperFamilySSF1019361.44E-291103IPR015300DNA-binding pseudobarrel domain
PfamPF023624.6E-302106IPR003340B3 DNA binding domain
PROSITE profilePS5086315.1572107IPR003340B3 DNA binding domain
SMARTSM010191.9E-242107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MFDKVVTPSD VGRLNRLVIP KQHAEKYFPL DSSSNEKGLL LNFEDRNGKS WRFRYSYWNS  60
SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG VGESGKDRLY IDWRRRPNAP DPTSFAHFQM  120
QNQFNFPQSV RWGGGIYSLP QSYEPLHRLN YSIYPYNHHH QRQQQQQLQQ QQHQAITYGN  180
VAQSQYYLRS SSSGSYHHHH HHQPQQIGAM QEGRVEPMVI ESVPVVQGNK TAAKRLRLFG  240
VNMECPTPTT DESSSSSPHA TIVSDHDSPY FPSSSLQSRL SNNNTPFPLS RMQAEYSKKG  300
KSSLSFDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-6611097116B3 domain-containing transcription factor NGA1
5os9_B3e-6611097116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6142890.0JX614289.1 Gossypium hirsutum clone NBRI_GE57566 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612681.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_017612682.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827992e-82NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A1U8MES90.0A0A1U8MES9_GOSHI; B3 domain-containing transcription factor NGA1-like
STRINGGorai.001G150200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-76B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]