PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14124_BGI-A2_v1.0
Common NameF383_06530
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 470aa    MW: 52042.1 Da    PI: 7.7834
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14124_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.43e-41182259178
                                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                 +Cqv+gC+ dls+a++yhr+hkvCe hsk+p+v+vsgle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  Cotton_A_14124_BGI-A2_v1.0 182 RCQVKGCNLDLSSARDYHRKHKVCENHSKSPKVIVSGLERRFCQQCSRFHALSEFDENKRSCRRRLSDHNARRRKPQT 259
                                 6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-32177244IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.718180257IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.08E-39181262IPR004333Transcription factor, SBP-box
PfamPF031108.5E-32183256IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEWNEQTPLQ WDWENLMLNA TATEIPRRLR PVEWDIDEGE GGLDSVSVNS SSVAGCSGGS  60
GSDLGLVSLS KNLKSASIDS LSMGEAKLTK FTLEASEAIP DDISNKKEVS GIETTSTSLT  120
LVASVGSGEP LLSLKLGKQT YFEDVSTGTN ATDSSYSATL GTSSPLSAKR SKLNCRSTHV  180
VRCQVKGCNL DLSSARDYHR KHKVCENHSK SPKVIVSGLE RRFCQQCSRF HALSEFDENK  240
RSCRRRLSDH NARRRKPQTE ATHFNAARIP SLSSSSYDGK QRTSFVWNEV PILHNARPNK  300
KFALEGTFYS KSSQMTSYTP TKLGNINEQV QLNPITMRCH DFNKFLPSKG KQNTAEVLDG  360
GVEQSMVASN TGRAQELQRA LSLLSNDSQI SSEPKHGSLT YPIMHVNLTS TSQPAMNAIP  420
QGFQHALPEN WQIEQEEETT TKSRMHTSDV DDRFREFLLL KAPYDGGFYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271832561184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223190.0KJ622319.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615592.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017615593.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017615595.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017615596.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017615597.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_017615598.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A1U8M5W90.0A0A1U8M5W9_GOSHI; squamosa promoter-binding-like protein 2
STRINGGorai.012G176500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.37e-75squamosa promoter binding protein-like 2