PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14147_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 116aa    MW: 13338.4 Da    PI: 10.0198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14147_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.8e-13491188
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
                                f+kvlt+ d  +++  +lp +++++   ++ ++++ +l+++d  g  W+++++y +++    l +GW +Fv+ ++ ++gD+++++
  Cotton_A_14147_BGI-A2_v1.0  4 FVKVLTKIDLKRTS--SLPDSCLQASpqSQRSHGEAKLQVKDDAGVLWNFRCKYIRSGIVPRLDDGWIQFVRFQQFRTGDVITLY 86
                                899**999999998..******998898555567789*******************9999************************* PP

                                E-SSS CS
                          B3 84 ldgrs 88
                                 d+++
  Cotton_A_14147_BGI-A2_v1.0 87 KDDDT 91
                                55543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-13391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-11391IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-124103No hitNo description
SMARTSM010190.00144105IPR003340B3 DNA binding domain
PfamPF023622.1E-10490IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MAVFVKVLTK IDLKRTSSLP DSCLQASPQS QRSHGEAKLQ VKDDAGVLWN FRCKYIRSGI  60
VPRLDDGWIQ FVRFQQFRTG DVITLYKDDD TLTGPHYKIE VLKGHGDNVE RKFKLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5805663e-47JX580566.1 Gossypium hirsutum clone NBRI_GE13016 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458784.13e-53PREDICTED: uncharacterized protein LOC105779536
TrEMBLA0A2P5Q7246e-57A0A2P5Q724_GOSBA; Uncharacterized protein
STRINGGorai.012G151200.14e-56(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1896848