PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14161_BGI-A2_v1.0
Common NameF383_19508
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 325aa    MW: 35111.1 Da    PI: 8.5729
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14161_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822216.56.2e-6721451150
                      DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaag 83 
                                 ++++r ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp e+++++g
  Cotton_A_14161_BGI-A2_v1.0   2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPVERMDIVG 84 
                                 5899******************************************************************************* PP

                      DUF822  84 ssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsssl 150
                                  sa++sp+ss++        +sp++sy++sp+sssfpsp+s++ + + +   +sl+p+l++ls++sss+
  Cotton_A_14161_BGI-A2_v1.0  85 GSATVSPCSSYH--------PSPRASYNPSPASSSFPSPASSSYVVNPNGdvNSLFPWLKNLSSASSSA 145
                                 ************........*******************9999887766577**********9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.0E-663139IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG  60
WTVEPDGTTY RKGCKPVERM DIVGGSATVS PCSSYHPSPR ASYNPSPASS SFPSPASSSY  120
VVNPNGDVNS LFPWLKNLSS ASSSASSSKR PYSYIHGGSI SAPVTPPLSS PTARTPRMKN  180
DWEDQSVLPG WSAQQHSFLP SSTPPSPGRQ IVPDPEWFSG LQTPHSRPTS PTFSLVSSNP  240
FGFKEEVLAG GGSRMWTPGQ SGTCSPAIAA GLDQTADVPM SEVISDEFAF GSNATGLVKP  300
WEGERIHEEC GSDDLELTLG SSKTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431160.0AC243116.1 Gossypium raimondii clone GR__Ba0066P11-hvl, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642361.10.0PREDICTED: BES1/BZR1 homolog protein 4-like isoform X1
RefseqXP_017642362.10.0PREDICTED: BES1/BZR1 homolog protein 4-like isoform X2
RefseqXP_017642363.10.0PREDICTED: BES1/BZR1 homolog protein 4-like isoform X3
SwissprotQ9ZV881e-142BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A0B0NRF70.0A0A0B0NRF7_GOSAR; BES1/BZR1 4-like protein
STRINGGorai.002G052400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19172781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-127BES1/BZR1 homolog 4