PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14201_BGI-A2_v1.0
Common NameF383_32858
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 322aa    MW: 35493.6 Da    PI: 6.9349
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14201_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17215249135
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Cotton_A_14201_BGI-A2_v1.0 215 CLHCAAEKTPQWRTGPLGPKTLCNACGVRYKSGRL 249
                                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.0E-8121301IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.187209245IPR000679Zinc finger, GATA-type
SMARTSM004019.0E-15209259IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14213272No hitNo description
Gene3DG3DSA:3.30.50.101.7E-13213247IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.94E-12214261No hitNo description
PROSITE patternPS003440215240IPR000679Zinc finger, GATA-type
PfamPF003204.3E-15215249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEVGDFFVGG FYGGAAGNDF SPLKMMSTER KLPENFTVDD LLDFSNEDAI INDGFLENVA  60
GNSTDSSTVT CNFSVSGCDN HLSPVNLPHS SQFSGELCVP YDELAELEWL SNFVDDSFST  120
DQNLQSSLQI FATSKSLTPE SSSSSTRPDS LIQSPSNSNP IFQHETPLPG KARSKRSRVA  180
PCDWSTRLLH LNPKYAAQKK RESPNANTEL PVRKCLHCAA EKTPQWRTGP LGPKTLCNAC  240
GVRYKSGRLV PEYRPAASPT FVSAKHSNSH RKVLELRRQK EFQRAQHQQL ISQTSIFGIS  300
NGGCADDFLI HHHGGPNFSH MI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5847471e-102JX584747.1 Gossypium hirsutum clone NBRI_GE18132 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640778.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697814e-74GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0B0MW500.0A0A0B0MW50_GOSAR; GATA transcription factor
STRINGGorai.011G072500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-74GATA transcription factor 9
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]