PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14256_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 254aa    MW: 28058.1 Da    PI: 4.2537
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14256_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.68.3e-1687143359
                                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                                  lkr rrk +NRe+ArrsR+RK+++++eLe  +++L +eN++L k+l +  +++  +
  Cotton_A_14256_BGI-A2_v1.0  87 HLKRLRRKLSNRESARRSRKRKQEQLAELEFQAEQLRGENDSLFKQLTNAHQLIRDV 143
                                 58******************************************9999988887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-1184136No hitNo description
SMARTSM003384.0E-1485149IPR004827Basic-leucine zipper domain
PfamPF001709.5E-1387140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.95587133IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-1188139No hitNo description
CDDcd147021.17E-1790138No hitNo description
PROSITE patternPS00036092107IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MYIYKLGNES WGSTVCEGNN SNYRSRENEV RGATTPSSDH DQSDDDDDDV EEEDDDDDDE  60
DEEGGEGEGE VEEADAGQSE QSLDPSHLKR LRRKLSNRES ARRSRKRKQE QLAELEFQAE  120
QLRGENDSLF KQLTNAHQLI RDVGTNNRVL TSNVQALRHK VKLAEDMLAG GSFTCGLNQL  180
VQSHLTSQQP IATNNHNLGR VVNVSPTITV QGDSSSYAGF TDMGNSPNLG LPTLDFTNSN  240
QNNIGIGGDA MSWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18794LKRLRRKL
291107RRKLSNRESARRSRKRK
3101107RRSRKRK
4101108RRSRKRKQ
5103108SRKRKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9641831e-118JX964183.1 Gossypium hirsutum clone NBRI_TRANS-452 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643990.10.0PREDICTED: basic leucine zipper 9-like
TrEMBLA0A0D2R6T71e-178A0A0D2R6T7_GOSRA; Uncharacterized protein
TrEMBLA0A1U8PVH61e-176A0A1U8PVH6_GOSHI; uncharacterized protein LOC107963043
STRINGGorai.010G124200.11e-178(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.18e-38basic leucine zipper 9