PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14412_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 171aa    MW: 19435.4 Da    PI: 5.2824
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14412_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.6e-3916114199
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaC++lrr+C ++C+lapyfp +++ kfa vhk+FGasnv+k+++ ++e++reda+++lvyeA ar+rdPvyG++g i +l
  Cotton_A_14412_BGI-A2_v1.0  16 PCAACRMLRRRCDSNCILAPYFPCDEMDKFAKVHKVFGASNVIKMIQMVEETNREDAVKALVYEATARMRDPVYGSTGAICQL 98 
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallke 99 
                                 q+ +++l+ +l+++k+
  Cotton_A_14412_BGI-A2_v1.0  99 QKMVQELEMQLESTKA 114
                                 ***********99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.56715116IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3916113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGLESLIVTR PKTHQPCAAC RMLRRRCDSN CILAPYFPCD EMDKFAKVHK VFGASNVIKM  60
IQMVEETNRE DAVKALVYEA TARMRDPVYG STGAICQLQK MVQELEMQLE STKARVLELQ  120
QQKDQLWSVL TNVNHLELLS PINGGDNFCL GYDDSIAYDP DKFPVVGDWI F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3691174112LOB family transfactor Ramosa2.1
5ly0_B2e-3691174112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5819289e-73JX581928.1 Gossypium hirsutum clone NBRI_GE14664 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628331.11e-128PREDICTED: LOB domain-containing protein 25-like
SwissprotQ9SK082e-40LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A2P5YBG81e-126A0A2P5YBG8_GOSBA; Uncharacterized protein
STRINGGorai.007G110000.11e-124(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1863068
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-42LOB domain-containing protein 11