PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14477_BGI-A2_v1.0
Common NameF383_30454
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 523aa    MW: 59372.8 Da    PI: 8.8192
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14477_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.1e-171299499
                                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                          B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                                v+  s++++ + l++p  f ++ +g   +s  + l+ +sg sW+vkl   ++ +  ++ +GW +Fv ++ L+ g+++vF++dg+ 
  Cotton_A_14477_BGI-A2_v1.0 12 VF--SSTSSANSLRIPVGFNRNLEGR--GSGSVLLKGPSGYSWNVKL--VQRNDDLLFDEGWADFVADHSLECGEILVFRYDGDL 90
                                44..77788888*******9888877..5668***************..777778**************************9987 PP

                                EE..EEEEE-S CS
                          B3 89 efelvvkvfrk 99
                                 f   vkvf++
  Cotton_A_14477_BGI-A2_v1.0 91 VF--DVKVFDQ 99
                                77..9999987 PP
2B353.35e-17227320298
                                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                 + ++++ +v+ s  l +p +fa eh   ++++++++l++++g  W+v+    ++   +++l +GW +Fv++n++k+gD+++F+
  Cotton_A_14477_BGI-A2_v1.0 227 VRIMKRFNVSGSYTLNIPYQFAMEHL--PNCKTEIVLRNLKGACWTVNSVPtTRVHTSHTLCGGWLSFVRSNEIKAGDICIFE 307
                                 56667778888899********9996..45899***************954566666799*********************** PP

                                 E-SSSEE..EEEEE- CS
                          B3  84 ldgrsefelvvkvfr 98 
                                 l++  +fe++v+++r
  Cotton_A_14477_BGI-A2_v1.0 308 LVH--KFEFRVHILR 320
                                 987..7888999987 PP
3B348.22e-154285081396
                                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                          B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                 s  l +p kf +eh   + ++++++l++++g  W+v+   + k+++ +++ +GW  Fv++n++k gD+++F+l+++   e++v
  Cotton_A_14477_BGI-A2_v1.0 428 SYTLKIPYKFSKEHL--PYCKTQVVLRNLQGTCWTVNSLPDSKGRAvHTFCGGWMAFVRDNEIKIGDICIFELVNN--YEMRV 506
                                 45699*********4..346778***************6655555579999*********************9875..44456 PP

                                 EE CS
                          B3  95 kv 96 
                                 ++
  Cotton_A_14477_BGI-A2_v1.0 507 HI 508
                                 55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-232102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-222102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.0027100IPR003340B3 DNA binding domain
SMARTSM010191.1E-129100IPR003340B3 DNA binding domain
PfamPF023625.3E-141199IPR003340B3 DNA binding domain
CDDcd100175.98E-161498No hitNo description
Gene3DG3DSA:2.40.330.109.2E-24217320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-25219321IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-19224320No hitNo description
SMARTSM010191.5E-15226322IPR003340B3 DNA binding domain
PROSITE profilePS5086313.592226322IPR003340B3 DNA binding domain
PfamPF023621.6E-14226320IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-22408510IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-24410510IPR015300DNA-binding pseudobarrel domain
CDDcd100178.14E-19414508No hitNo description
SMARTSM010197.5E-11416512IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281416512IPR003340B3 DNA binding domain
PfamPF023621.6E-12425507IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSKPRRPHFL NVFSSTSSAN SLRIPVGFNR NLEGRGSGSV LLKGPSGYSW NVKLVQRNDD  60
LLFDEGWADF VADHSLECGE ILVFRYDGDL VFDVKVFDQS SCEKEVAFHC KCSQAGSVFH  120
GIVRQKRYRE EDDVSLDQDC EELLKRIRQS SFESDRDEEH CGRELILATT SCQGLTSCDE  180
NHDGTILKIT GKEDDLKLHG SGCIQMIGEF EEKKVAQSFN SCFPFFVRIM KRFNVSGSYT  240
LNIPYQFAME HLPNCKTEIV LRNLKGACWT VNSVPTTRVH TSHTLCGGWL SFVRSNEIKA  300
GDICIFELVH KFEFRVHILR VGQEDLIRQS RKAVLDRSDS TLLKKFVKNT SKVHSKLKKV  360
QICDNKGSKV LDKWKYGNAA KKSASVVLCS LSRSGTEKQV DEEKAARSFA SRFPSFVRIM  420
RKFNISGSYT LKIPYKFSKE HLPYCKTQVV LRNLQGTCWT VNSLPDSKGR AVHTFCGGWM  480
AFVRDNEIKI GDICIFELVN NYEMRVHISG SGRKGLDRQH TSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642748.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X2
TrEMBLA0A1U8HPH00.0A0A1U8HPH0_GOSHI; B3 domain-containing protein Os11g0197600-like isoform X2
STRINGGorai.005G105400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16907911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-20B3 family protein