PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14557_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 526aa    MW: 60028.2 Da    PI: 5.076
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14557_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.4e-34661572102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k++ei+ed+e++ ++sws + nsf+v+d+++f++++LpkyFkh+n++SF+RQLn+YgFkk+++++         weF+++
  Cotton_A_14557_BGI-A2_v1.0  66 FLTKTFEIVEDPETDPIVSWSIHRNSFIVWDSHKFSENLLPKYFKHKNLSSFIRQLNTYGFKKIDSDR---------WEFANE 139
                                 9********************999*****************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                  F+ gkk+ll++ikrk++
  Cotton_A_14557_BGI-A2_v1.0 140 GFQGGKKHLLKNIKRKNR 157
                                 ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.36E-3161155IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5562155IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.6E-3662155IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-176689IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3066155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-17104116IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340105129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-17117129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEESAAMKES TRAAIRDGDD DQKVSLEAKE MSVVDDMING GDLSSSSTDI LVEPMAGING  60
SGPPPFLTKT FEIVEDPETD PIVSWSIHRN SFIVWDSHKF SENLLPKYFK HKNLSSFIRQ  120
LNTYGFKKID SDRWEFANEG FQGGKKHLLK NIKRKNRYNS SNINTELEAE IGILKKNQSE  180
LKMEIVKLKQ KNDESNDKLE AEIGILKKNQ SELKMEIVKL KQKNDESNDK LTVFDDRIRF  240
VERRQQQMLN FLVKLVKFPI LFQQLMKKKQ VERKELDEGE FSRKKRRLLE TQVTKSLLEL  300
MGTDQTVTKS LNEPMETDRR GTKNLPEPIG TDQRVTKNLP GPMGNDQSVT KSLPEPMGTD  360
RSVAKSLPEP IGTDQRVTKD LAEPTGTDQC VPKTLPKPME TNQRITKTLP KPMEIGQSVI  420
NSKNQVDQVL EPMQSDHFSK FLLDCMEKDY WVSMEDQENI DAQEMSSVYH VMAENLLGES  480
SCVENATNEE LSVKDSKVYL ELEDLINWKP SNLTGFVNDL LVEQTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-255715517129Heat shock factor protein 1
5d5v_B5e-255715517129Heat shock factor protein 1
5d5v_D5e-255715517129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266286KKKQVERKELDEGEFSRKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486150.0KJ748615.1 Gossypium hirsutum HSF12 (HSF12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016729120.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_016729121.10.0PREDICTED: heat stress transcription factor A-6b-like
TrEMBLA0A2P5VN710.0A0A2P5VN71_GOSBA; Uncharacterized protein
STRINGGorai.004G284200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2456922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.19e-71heat shock transcription factor A2