PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14598_BGI-A2_v1.0

Common Name

F383_01990

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 133aa MW: 15044.1 Da PI: 4.6138

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14598_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.5	1e-10	11	54	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ e d+ + +a + ++ + +W++Ia+ + g+tl+++k ++ Cotton_A_14598_BGI-A2_v1.0 11 EWSREQDKAFENALATYPEDtsyRWEKIAADVR-GKTLEEIKQHY 54 7******************************.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.638	7	62	IPR017884	SANT domain
SMART	SM00717	9.5E-9	8	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.11E-12	10	66	IPR009057	Homeodomain-like
CDD	cd00167	2.75E-8	11	57	No hit	No description
Pfam	PF00249	4.1E-8	11	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-5	11	62	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MTVHEASNSS EWSREQDKAF ENALATYPED TSYRWEKIAA DVRGKTLEEI KQHYELLEDD 60 VNRIESGCVP LPAYSSSEGS TCHAGDEVTS KKGSDHLGHF NSESDHGSKN SRSDQERRKG 120 IAWTEDEHRS IDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-19	12	80	11	79	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016718570.1	6e-91	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_017634211.1	6e-91	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_017634212.1	6e-91	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q9FNN6	4e-48	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A0B0PB96	1e-89	A0A0B0PB96_GOSAR; Transcription factor MYB1R1
TrEMBL	A0A1U8LVG7	1e-89	A0A1U8LVG7_GOSHI; transcription factor DIVARICATA-like
STRING	Gorai.008G147400.1	1e-86	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23121	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-50	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]