PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14671_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 166aa MW: 19000 Da PI: 7.2956

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14671_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.3	3.3e-13	31	88	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ +r+++NReAArrsR RK++ ++ L v +L eN + +++ ++ + + ++e Cotton_A_14671_BGI-A2_v1.0 31 RKRKRMASNREAARRSRMRKQKHLDDLMGQVSQLAHENNQILANINITTQIYLNIEAE 88 5789***********************************9999998877777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-15	27	91	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-11	29	106	No hit	No description
PROSITE profile	PS50217	10.404	29	76	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.5E-10	31	76	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.19E-12	31	83	No hit	No description
CDD	cd14702	2.11E-17	32	82	No hit	No description
PROSITE pattern	PS00036	0	34	49	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MATSRTGSSS SSATRRSSSS VEEFQQVLNE RKRKRMASNR EAARRSRMRK QKHLDDLMGQ 60 VSQLAHENNQ ILANINITTQ IYLNIEAENT VLRAQMAELS TRLQSLNEIN DFISSNNGVF 120 GYDHPNNYEA DHDHHHHQVN IDTFMNNPWG CFYGNQPIFA SADMIM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	51	RKRKRMASNREAARRSRMRKQK
2	43	50	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250\|UniProtKB:O65683, ECO:0000269\|PubMed:29348240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00267	DAP	Transfer from AT2G18160	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629679.1	1e-122	PREDICTED: bZIP transcription factor 2-like
Swissprot	Q9SI15	2e-43	BZIP2_ARATH; bZIP transcription factor 2
TrEMBL	A0A1U8J1X5	1e-120	A0A1U8J1X5_GOSHI; bZIP transcription factor 53-like
TrEMBL	A0A2P5Y3E8	1e-120	A0A2P5Y3E8_GOSBA; Uncharacterized protein
STRING	Gorai.007G200600.1	4e-97	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM501	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18160.1	1e-45	basic leucine-zipper 2

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]