PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14745_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 302aa MW: 34251.5 Da PI: 8.1202

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14745_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.3	3.3e-33	169	226	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp+vv++tYeg+Hnh+ Cotton_A_14745_BGI-A2_v1.0 169 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCGVKKRVERSFQDPSVVITTYEGSHNHH 226 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-34	153	228	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-29	161	228	IPR003657	WRKY domain
PROSITE profile	PS50811	32.26	163	228	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	168	227	IPR003657	WRKY domain
Pfam	PF03106	4.1E-26	169	226	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MSSSNEKNDP LYNYDPFQGF NSSTFPFFDY NNLLVYSQAA PTPPFQGLDS SYMNFTDCLH 60 DQNSFSRPFF DMSGSSSDVV APVHDNISNS KQTVDDSVRI KIDNTENPST PNSSVSSPSN 120 GGTAVEDSSK TNKGSEHEKS KKVNKPKKER QQREPRFAFL TKTEIDVLED GYRWRKYGQK 180 AVKNSPYPRS YYRCTTQKCG VKKRVERSFQ DPSVVITTYE GSHNHHIPTT LRGNNITSSA 240 AFPHEFLAHY FFPSTSNHQE DQNSMQHQSV ALHQHQQQQQ LQVSDYGLLH NLVSSSTRKQ 300 AP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-30	161	228	10	77	Probable WRKY transcription factor 4
2lex_A	1e-30	161	228	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031104	0.0	KF031104.1 Gossypium hirsutum WRKY transcription factor 73 (WRKY73) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610500.1	0.0	PREDICTED: probable WRKY transcription factor 28
Swissprot	Q8VWJ2	2e-53	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A1U8HVW1	0.0	A0A1U8HVW1_GOSHI; probable WRKY transcription factor 28
STRING	Gorai.006G008200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24574	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	2e-50	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]