PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14771_BGI-A2_v1.0
Common NameF383_30441
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 603aa    MW: 66519.9 Da    PI: 5.1071
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14771_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.83.7e-1132366032374
                        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                  ++Ll+cA+ +s+++ e+a + L +l+e +s++gdp++R+a+yft+AL ++++       k l+  et+   s++ + ++k++
  Cotton_A_14771_BGI-A2_v1.0 236 LKALLDCAR-LSDSEPERAIKSLVELRESVSERGDPTERVAFYFTQALYSKVSL---PAEKRLNLLETT---SEDFTLSYKVL 311
                                 689*****9.677799999999******************************98...677788888888...89999****** PP

                        GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetger 164
                                 ++++P+ kf+hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l +tg+r
  Cotton_A_14771_BGI-A2_v1.0 312 NDACPYSKFAHLTANQAILEATERATKIHIVDFGIVQGVQWAALLQALATRSAGKPtRIRISGIPAPVLGssPAPSLYATGNR 394
                                 ****************************************************77666*********998888999******** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L++fA+ l+++fef++ + + +++l+ + +rv+ +E+laVn++lql++lld +  + +   + L+l ksl+Pk+v++ e ea+
  Cotton_A_14771_BGI-A2_v1.0 395 LRDFAKLLDLNFEFEP-ILTPIKELKESCFRVDDDEVLAVNFMLQLYNLLDATPVTVE---AALRLAKSLNPKIVTLGEYEAS 473
                                 ****************.799******************************88777777...9********************* PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvpl 329
                                 +n+  F++rf +al+yysa+f+sle +lpr+s er+ vEr+llg +i  ++ +e+ae rrer+e +e+W+  +e+aGF++v+l
  Cotton_A_14771_BGI-A2_v1.0 474 LNRVGFVNRFKNALRYYSAVFESLEPNLPRDSPERVEVERQLLGGKIGAIIGAEEAEkRRERMEDKEQWKVLMESAGFETVSL 556
                                 ***************************************************9999888************************* PP

                        GRAS 330 sekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                 s++a +qak ll +++ s  y++ e++  ++ l Wk+ pL++vS+Wr
  Cotton_A_14771_BGI-A2_v1.0 557 SHYAISQAKILLWNYNySSSYSLIESKPGFLsLAWKEVPLLTVSSWR 603
                                 ****************9999*99988888777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.64209581IPR005202Transcription factor GRAS
PfamPF035141.3E-110236603IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MAIAQQVIKQ QQQQEQQQEQ HHHQQQQLLG VSHVTLNPWP NNPHHGVSNS PILGYGLSGP  60
GFTDLFQGDT GEGFQFPNMG HHHSSGFRFP DFGGGSGGEF DTDEWMDCLM NSGDSTDSSN  120
LPSGCEVWQN NADFGLYGAD PFSACPNRLS VACPTPSDLN RVIFPTEAQK NLSPTLQSQH  180
QLPTWSPSPS PPPPPPPHVA VKETKASSPP SQTPLTNDAA AVSADSSEIE SAPPLLKALL  240
DCARLSDSEP ERAIKSLVEL RESVSERGDP TERVAFYFTQ ALYSKVSLPA EKRLNLLETT  300
SEDFTLSYKV LNDACPYSKF AHLTANQAIL EATERATKIH IVDFGIVQGV QWAALLQALA  360
TRSAGKPTRI RISGIPAPVL GSSPAPSLYA TGNRLRDFAK LLDLNFEFEP ILTPIKELKE  420
SCFRVDDDEV LAVNFMLQLY NLLDATPVTV EAALRLAKSL NPKIVTLGEY EASLNRVGFV  480
NRFKNALRYY SAVFESLEPN LPRDSPERVE VERQLLGGKI GAIIGAEEAE KRRERMEDKE  540
QWKVLMESAG FETVSLSHYA ISQAKILLWN YNYSSSYSLI ESKPGFLSLA WKEVPLLTVS  600
SWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1482346033375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638306.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_017638307.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0B0MWE10.0A0A0B0MWE1_GOSAR; Scarecrow-like protein 4
STRINGGorai.008G068100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein