PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14779_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 370aa    MW: 40777.4 Da    PI: 6.8519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14779_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.3e-09190237455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  Cotton_A_14779_BGI-A2_v1.0 190 SHSLAERARREKISKKMKCLQDLVPGC----NTVTGKAGMLDEIINYVQSLQ 237
                                 8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.00E-8184241No hitNo description
SuperFamilySSF474594.06E-16184253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17186255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.199186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-10192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDVTLLDRQQ ATYPLELCAS SVPLFQSYLG SGPIVELKRP EAYLSGDGFH EFVYFPVGGG  60
PEFGDSEKLN LVPPDAAPGY CISRTSSCQM TAFHAAAMKE EREDMILEKM ESTPGSGSRE  120
SFTKRKAEVV AERKSKDKRI KGELEGESEV KTKCSTQVSR NSSKENSKAC EVQKPDYIHV  180
RARRGQATDS HSLAERARRE KISKKMKCLQ DLVPGCNTVT GKAGMLDEII NYVQSLQRQV  240
EFLSMKIAAL NSSAEFNVEN LPIKELPSYV ANFPAAAKLP AMPNLTCFQL NSMQKEAVNC  300
MLNETMHPPL TATEGIASAS VSIPEQALSS STITILFLES RQTSRGIGIL NATIHLLYSL  360
YFSDSYSYHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635489.10.0PREDICTED: transcription factor BEE 2-like isoform X1
TrEMBLA0A2P5XYH50.0A0A2P5XYH5_GOSBA; Uncharacterized protein
STRINGGorai.008G067500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.16e-66BR enhanced expression 2