PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14875_BGI-A2_v1.0
Common NameF383_01230
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 318aa    MW: 34899.8 Da    PI: 10.0163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14875_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31244302259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYeg+Hnh+
  Cotton_A_14875_BGI-A2_v1.0 244 HDDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVEDPRMLIVTYEGDHNHS 302
                                 69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.0E-17194241IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-33231302IPR003657WRKY domain
PROSITE profilePS5081131.169238304IPR003657WRKY domain
SuperFamilySSF1182901.44E-26241302IPR003657WRKY domain
SMARTSM007749.1E-37243303IPR003657WRKY domain
PfamPF031061.1E-26245301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTVELMMGHG GVGGGGNSFT VKMEETALKE AANAGIQGFE ELIRLMSKSQ QLRSQDVCFN  60
APSSSEPAME IQAVTDKTVS SFKKVISLLG RPRTGHARFR RAPLNHLPQQ QQIQVSKDEE  120
VSTFKPLYST PSCKLPPLPT KSSHVLKTGV LEPGNSVMSS LTGDTDSIQH QPCFSIGFQF  180
TNPSSHGKPP LSSKRKCNSM DDVANLKCGS SSSARCHCSK KRKSRVKRVI RVPAVSNKMA  240
DIPHDDYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERAVEDPRM LIVTYEGDHN  300
HSHNITTDVP SALVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22231301271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310840.0KF031084.1 Gossypium hirsutum WRKY transcription factor 37 (WRKY37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643814.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX07e-94WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0B0P6Q90.0A0A0B0P6Q9_GOSAR; Putative WRKY transcription factor 7-like protein
STRINGGorai.010G022600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-81WRKY DNA-binding protein 7